Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 5.1e-151 537.7 272 100.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.6e-139 497.3 265 96.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 5.8e-131 471.1 267 89.9
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.3e-127 459.1 266 89.1
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.3e-114 416.8 266 81.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.1e-104 382.9 265 78.1
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 3.6e-104 382.1 254 80.3
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.1e-102 377.1 255 79.2
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.1e-102 377.1 255 79.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.3e-102 375.6 263 77.9
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 2.2e-101 372.9 263 77.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 3.7e-101 372.1 269 75.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.5e-99 366.7 194 94.3
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 7.7e-91 337.8 245 71.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 1.3e-90 337.0 252 69.8
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.7e-90 336.7 237 72.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.2e-90 336.3 258 69.4
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.9e-90 335.9 272 65.8
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 8.5e-90 334.3 244 70.1
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.5e-89 332.8 254 67.7
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 1.2e-88 330.5 258 67.1
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 2.1e-88 329.7 273 64.5
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 4.7e-88 328.6 240 70.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 4.7e-88 328.6 239 70.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.4e-87 327.0 211 78.7
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.4e-87 327.0 257 66.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.0e-87 325.9 264 66.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.0e-87 325.5 273 63.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 5.2e-87 325.1 261 65.1
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 6.7e-87 324.7 203 78.3
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.8e-87 324.3 210 77.6
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.5e-86 323.6 214 75.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 2.0e-86 323.2 252 67.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 2.6e-86 322.8 238 72.7
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 3.3e-86 322.4 254 66.1
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 4.4e-86 322.0 262 66.4
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.8e-85 319.3 233 70.4
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 1.8e-84 316.6 259 66.4
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.8e-84 316.6 232 69.8
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.8e-84 316.6 232 69.8
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.4e-84 316.2 252 66.3
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.1e-84 315.8 242 70.7
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.1e-84 315.5 231 68.4
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 4.1e-84 315.5 212 74.5
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.0e-83 313.2 256 65.6
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.7e-83 312.8 263 63.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 7.7e-83 311.2 235 67.2
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 7.7e-83 311.2 243 66.3
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.7e-83 311.2 243 66.3
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 7.7e-83 311.2 237 69.6
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.3e-82 310.5 243 66.3
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 1.7e-82 310.1 264 62.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.2e-82 309.7 239 68.2
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.9e-82 309.3 216 72.7
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.9e-82 309.3 240 67.5
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 3.8e-82 308.9 216 72.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 5.0e-82 308.5 216 72.7
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 6.5e-82 308.1 204 75.5
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 6.5e-82 308.1 226 68.6
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 8.5e-82 307.8 204 75.0
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 1.1e-81 307.4 230 69.1
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-81 307.4 204 74.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.5e-81 307.0 234 67.1
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-81 307.0 204 75.0
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-81 305.4 213 72.8
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.2e-81 304.7 193 78.2
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 9.4e-81 304.3 239 66.9
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.1e-80 303.1 236 69.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-80 303.1 254 65.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-80 303.1 217 71.0
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 2.7e-80 302.8 255 62.4
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.7e-80 302.8 200 75.5
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.6e-80 302.4 204 73.0
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 4.7e-80 302.0 222 70.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 4.7e-80 302.0 207 72.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 6.1e-80 301.6 207 74.9
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 6.1e-80 301.6 255 61.2
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 8.0e-80 301.2 259 59.8
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 8.0e-80 301.2 210 71.4
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.0e-79 300.8 236 67.8
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.0e-79 300.8 228 70.2
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.4e-79 300.4 204 73.0
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.0e-79 299.3 204 72.1
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.0e-79 298.9 269 61.0
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.0e-79 298.9 205 73.7
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 5.2e-79 298.5 213 71.4
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 5.2e-79 298.5 210 71.0
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 6.8e-79 298.1 239 66.9
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 6.8e-79 298.1 214 72.0
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 8.8e-79 297.7 193 76.2
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 8.8e-79 297.7 216 69.9
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-78 297.4 204 73.0
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.5e-78 297.0 210 70.5
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.0e-78 296.6 236 67.4
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 3.4e-78 295.8 193 76.7
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 7.5e-78 294.7 225 70.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 4.8e-77 292.0 207 69.6
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-76 290.4 201 71.6
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.4e-76 289.7 216 68.5
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.0e-75 286.6 220 69.1
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.7e-75 286.2 255 63.9
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.3e-74 283.9 219 66.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.3e-74 283.9 194 73.7
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.2e-74 283.1 196 70.4
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 2.2e-74 283.1 193 72.0
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 5.0e-74 282.0 209 70.8
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 6.5e-74 281.6 215 67.4
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 8.5e-74 281.2 223 64.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.2e-73 278.9 219 65.3
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.2e-72 277.3 198 68.7
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 3.6e-72 275.8 236 59.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.1e-72 275.0 185 74.6
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.0e-71 272.3 177 79.7
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.2e-71 271.9 193 69.9
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 6.8e-71 271.6 194 71.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 5.7e-70 268.5 203 65.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 7.5e-70 268.1 206 65.5
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 3.1e-68 262.7 183 73.2
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.8e-66 255.8 202 65.3
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-65 253.8 197 69.5
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 3.3e-65 252.7 177 71.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 1.6e-64 250.4 177 71.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 8.0e-64 248.1 179 69.3
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 3.7e-61 239.2 236 55.5
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 8.3e-61 238.0 184 70.1
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 2.7e-59 233.0 210 58.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 3.0e-58 229.6 214 56.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 2.8e-56 223.0 213 54.0
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 7.5e-54 214.9 165 66.7
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 7.5e-54 214.9 165 66.7
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 2.7e-51 206.5 217 55.8
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 3.5e-51 206.1 269 48.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-48 196.4 177 60.5
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 7.5e-46 188.3 130 73.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-45 187.6 197 50.3
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 4.3e-41 172.6 199 48.2
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 3.6e-40 169.5 106 77.4
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 6.4e-37 158.7 106 72.6
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.6e-33 145.6 206 42.7
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.6e-33 145.6 88 77.3
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.6e-30 136.7 227 40.1
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.3e-29 134.4 87 72.4
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.1e-23 114.8 226 35.0
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.4e-23 114.4 214 36.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 4.0e-23 112.8 209 33.0
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.8e-21 106.3 188 35.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 4.9e-21 105.9 140 46.4
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 4.9e-21 105.9 90 60.0
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 7.1e-20 102.1 70 70.0
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.9e-18 96.3 223 30.9
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 4.0e-15 86.3 69 65.2
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.0e-14 84.0 179 35.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 6.4e-13 79.0 65 64.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.4e-12 77.8 111 43.2
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 7.1e-12 75.5 48 72.9
C09p34920 Brassica napus HOM05D001108 ORTHO05D005418 2.1e-11 73.9 54 72.2
BolC9t56339H Brassica oleracea HOM05D001108 ORTHO05D005418 2.1e-11 73.9 54 72.2
C09p34930 Brassica napus HOM05D001108 ORTHO05D005418 6.0e-11 72.4 50 76.0
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.1e-07 60.1 62 58.1


User provided reference genes

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