Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 3.1e-84 315.1 156 100.0
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 7.3e-78 293.9 153 94.1
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 3.4e-75 285.0 152 90.8
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 4.9e-74 281.2 153 88.9
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 9.2e-73 276.9 153 88.2
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 1.6e-72 276.2 152 89.5
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 2.1e-72 275.8 153 87.6
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 2.1e-72 275.8 153 87.6
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 2.7e-72 275.4 153 86.9
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 2.7e-72 275.4 147 90.5
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 1.3e-71 273.1 153 88.2
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 5.1e-71 271.2 153 87.6
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 2.5e-70 268.9 152 86.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 9.3e-65 250.4 148 82.4
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 1.1e-60 236.9 142 80.3
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 1.1e-44 183.7 146 61.0
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 5.3e-44 181.4 146 64.4
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 6.9e-44 181.0 157 60.5
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 2.0e-43 179.5 138 63.8
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.6e-43 179.1 146 63.7
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 3.4e-43 178.7 149 61.7
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 3.4e-43 178.7 146 63.7
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 1.0e-42 177.2 156 59.6
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.3e-42 176.8 146 61.6
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 2.2e-42 176.0 138 63.0
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 3.8e-42 175.3 165 58.2
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 1.1e-41 173.7 127 65.4
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 2.5e-41 172.6 153 58.2
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 4.2e-41 171.8 144 59.0
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 5.5e-41 171.4 148 62.2
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 7.1e-41 171.0 145 60.7
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 9.3e-41 170.6 148 60.8
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 1.2e-40 170.2 153 55.6
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.6e-40 169.9 125 66.4
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.7e-40 169.1 144 58.3
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 4.6e-40 168.3 132 60.6
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 6.0e-40 167.9 140 57.9
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 7.9e-40 167.5 149 57.7
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 7.9e-40 167.5 147 59.2
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 1.0e-39 167.2 144 58.3
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 1.3e-39 166.8 155 55.5
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 1.8e-39 166.4 152 53.9
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 2.3e-39 166.0 153 57.5
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.0e-39 165.6 147 55.8
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 3.9e-39 165.2 154 57.1
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 3.9e-39 165.2 147 56.5
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 5.1e-39 164.9 147 56.5
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 6.7e-39 164.5 148 56.1
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 1.5e-38 163.3 157 55.4
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.9e-38 162.9 135 56.3
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.9e-38 162.9 149 57.7
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.9e-38 162.9 146 59.6
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.9e-38 162.9 128 60.9
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 1.9e-38 162.9 149 57.7
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.5e-38 162.5 124 63.7
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.5e-38 162.5 124 63.7
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 4.3e-38 161.8 142 57.7
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 5.7e-38 161.4 146 57.5
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 5.7e-38 161.4 146 56.2
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 5.7e-38 161.4 125 61.6
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 7.4e-38 161.0 123 64.2
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 9.7e-38 160.6 146 56.2
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 1.3e-37 160.2 142 56.3
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.3e-37 160.2 155 54.8
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 6.3e-37 157.9 129 58.1
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 6.3e-37 157.9 128 58.6
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 8.2e-37 157.5 148 57.4
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 8.2e-37 157.5 148 57.4
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 8.2e-37 157.5 152 57.2
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 8.2e-37 157.5 125 63.2
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.1e-36 157.1 161 53.4
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 1.1e-36 157.1 146 54.1
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.8e-36 156.4 141 58.2
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 5.3e-36 154.8 146 54.8
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 6.9e-36 154.5 152 56.6
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 9.0e-36 154.1 146 53.4
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.2e-35 153.7 124 61.3
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 1.5e-35 153.3 141 53.9
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 1.5e-35 153.3 152 56.6
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 2.6e-35 152.5 125 56.0
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 3.4e-35 152.1 148 56.1
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.2e-34 149.4 125 60.0
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 6.5e-34 147.9 150 52.0
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 2.5e-33 146.0 142 51.4
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 3.2e-33 145.6 123 60.2
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 1.8e-31 139.8 147 50.3
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 3.0e-31 139.0 142 52.1
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 3.9e-31 138.7 126 52.4
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 1.3e-29 133.7 143 50.3
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 3.7e-29 132.1 115 60.0
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 1.1e-28 130.6 108 59.3
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.4e-28 130.2 128 51.6
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 1.4e-28 130.2 130 51.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.4e-28 129.4 67 92.5
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 2.4e-28 129.4 158 46.2
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 9.1e-28 127.5 124 49.2
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 1.7e-26 123.2 125 51.2
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 3.8e-26 122.1 86 68.6
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 2.2e-21 106.3 145 40.0
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.3e-18 97.1 81 64.2
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 6.5e-18 94.7 115 40.9
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 8.5e-18 94.4 98 51.0
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.8e-12 76.6 112 39.3
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 9.4e-09 64.3 104 37.5
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 1.6e-08 63.5 78 44.9
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 1.6e-08 63.5 62 53.2
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.6e-08 62.4 62 53.2
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 3.6e-08 62.4 116 31.0
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 3.0e-07 59.3 111 31.5
ATR0414G002 Amborella trichopoda HOM05D007363 ORTHO05D009018 1.5e-06 57.0 142 31.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.5e-06 57.0 107 32.7


User provided reference genes

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