Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 1.6e-100 369.4 184 100.0
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.1e-88 330.1 184 89.7
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 1.2e-87 326.6 192 88.5
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 2.5e-85 318.9 184 87.5
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 1.8e-83 312.8 186 87.1
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 2.9e-81 305.4 186 84.9
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 4.1e-80 301.6 190 83.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 1.6e-79 299.7 188 83.0
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 1.6e-79 299.7 188 83.0
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 1.6e-79 299.7 188 83.0
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 8.6e-78 293.9 190 81.6
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.6e-76 289.7 172 83.7
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 8.9e-75 283.9 191 77.5
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.5e-66 256.5 185 71.9
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 1.9e-61 239.6 192 65.1
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 2.4e-59 232.6 168 68.5
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 4.0e-59 231.9 190 63.2
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 3.4e-58 228.8 172 67.4
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 1.7e-57 226.5 173 65.9
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 4.9e-57 224.9 190 62.1
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 4.9e-57 224.9 185 63.8
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 3.2e-56 222.2 167 66.5
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 7.1e-56 221.1 157 70.7
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 1.2e-55 220.3 167 66.5
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 2.7e-55 219.2 167 66.5
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 6.0e-55 218.0 193 60.1
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 6.0e-55 218.0 168 64.9
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 7.9e-55 217.6 192 60.9
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.0e-54 217.2 191 58.6
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.0e-54 217.2 167 65.3
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 3.9e-54 215.3 179 63.7
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 5.1e-54 214.9 170 64.1
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 5.1e-54 214.9 155 66.5
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.1e-53 213.8 174 63.2
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 1.5e-53 213.4 193 58.5
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 2.5e-53 212.6 191 60.7
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 3.3e-53 212.2 193 58.0
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 4.3e-53 211.8 167 62.3
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 4.3e-53 211.8 188 60.6
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 4.3e-53 211.8 176 62.5
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 4.3e-53 211.8 169 62.7
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 7.3e-53 211.1 181 60.2
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 7.3e-53 211.1 175 61.1
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 9.6e-53 210.7 171 60.8
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.3e-52 210.3 141 68.8
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 1.6e-52 209.9 174 60.3
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.6e-52 209.9 168 63.1
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 2.1e-52 209.5 171 62.0
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.1e-52 209.5 193 57.5
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 2.8e-52 209.1 172 61.0
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 3.6e-52 208.8 183 58.5
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 3.6e-52 208.8 192 58.3
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 6.2e-52 208.0 172 61.6
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 6.2e-52 208.0 174 61.5
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.1e-51 207.2 185 61.1
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 1.8e-51 206.5 174 61.5
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 2.4e-51 206.1 168 62.5
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 3.1e-51 205.7 168 62.5
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 4.0e-51 205.3 169 61.5
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 4.0e-51 205.3 168 62.5
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 4.0e-51 205.3 174 59.8
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 2.0e-50 203.0 182 59.3
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 3.4e-50 202.2 158 64.6
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 4.5e-50 201.8 168 61.3
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 5.8e-50 201.4 171 60.8
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 7.6e-50 201.1 192 55.7
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 3.8e-49 198.7 162 61.1
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 6.4e-49 198.0 170 59.4
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 8.4e-49 197.6 134 70.9
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 1.4e-48 196.8 172 57.0
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 1.9e-48 196.4 188 54.8
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.9e-48 196.4 176 55.7
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 2.4e-48 196.1 170 58.8
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 2.4e-48 196.1 168 59.5
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 5.4e-48 194.9 143 62.9
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 7.1e-48 194.5 182 53.8
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 7.1e-48 194.5 171 55.6
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 2.1e-47 193.0 146 63.0
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 2.7e-47 192.6 156 60.3
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 3.5e-47 192.2 163 58.9
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 6.0e-47 191.4 171 59.1
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 7.9e-47 191.0 173 56.1
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 2.3e-46 189.5 160 58.1
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.3e-46 189.5 135 63.7
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.3e-46 189.5 135 63.7
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.3e-46 189.5 135 63.7
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 6.7e-46 188.0 147 63.3
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 6.7e-46 188.0 163 56.4
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 2.5e-45 186.0 142 61.3
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 3.3e-45 185.7 170 54.7
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 4.3e-45 185.3 167 54.5
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 4.5e-42 175.3 139 56.8
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 5.8e-42 174.9 297 39.4
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 3.8e-41 172.2 179 53.1
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 1.8e-38 163.3 127 67.7
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 7.4e-37 157.9 127 66.9
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 1.6e-36 156.8 156 45.5
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 3.1e-35 152.5 117 66.7
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.3e-33 147.1 137 50.4
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.7e-33 146.7 174 50.0
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.2e-32 142.1 95 69.5
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 5.5e-32 141.7 138 46.4
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.3e-30 137.1 108 52.8
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.1e-29 134.0 92 67.4
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.1e-27 125.6 102 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 2.6e-26 122.9 138 47.1
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 1.3e-25 120.6 109 53.2
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 8.2e-20 101.3 100 46.0
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 1.1e-16 90.9 120 44.2
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 2.5e-16 89.7 136 38.2
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.2e-15 87.4 61 63.9
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 7.9e-15 84.7 140 37.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.6e-10 69.7 64 64.1
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 8.8e-06 54.7 120 25.0


User provided reference genes

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