Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 3.5e-222 774.6 390 100.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 1.6e-206 722.6 387 93.5
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 5.1e-205 717.6 386 93.5
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 7.4e-204 713.8 387 92.2
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.1e-197 691.0 387 90.2
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 4.3e-196 688.0 385 90.9
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.1e-194 683.3 385 90.4
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 5.9e-193 677.6 385 89.4
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-192 674.9 385 89.1
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 3.8e-192 674.9 385 89.1
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.3e-189 665.6 385 88.6
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 3.9e-189 664.8 387 85.5
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.9e-185 651.0 387 85.8
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 4.2e-183 644.8 374 85.0
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 8.5e-176 620.5 360 86.4
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.5e-175 619.8 314 97.8
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.4e-173 613.2 352 85.8
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.2e-172 610.1 378 80.7
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.2e-172 610.1 365 83.0
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.2e-172 610.1 378 81.0
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 4.8e-171 604.7 378 80.4
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.8e-171 604.7 352 84.7
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.8e-170 602.8 382 80.9
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.0e-169 599.4 348 83.0
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.7e-169 599.0 404 76.2
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 7.7e-169 597.4 354 81.9
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.5e-167 593.2 353 81.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.5e-167 592.4 365 78.6
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.5e-167 592.4 349 81.4
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.2e-167 592.0 359 80.2
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 3.2e-167 592.0 353 81.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.2e-166 590.1 359 78.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.2e-166 590.1 349 82.2
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.6e-166 589.7 385 76.4
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 3.6e-166 588.6 381 75.3
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 4.7e-166 588.2 369 77.8
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.0e-165 587.0 353 80.2
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.4e-165 586.6 374 77.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.8e-165 586.3 337 86.4
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.8e-165 586.3 353 80.5
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.4e-164 582.0 386 76.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 4.4e-164 581.6 349 80.2
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.2e-163 579.3 369 77.0
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.8e-163 578.9 349 81.1
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.4e-162 576.6 353 78.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.4e-162 576.6 382 73.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.6e-161 573.2 365 76.4
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.0e-161 572.8 379 76.0
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.7e-161 572.4 347 79.5
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.7e-161 572.4 373 75.1
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 3.5e-161 572.0 364 76.6
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 2.9e-160 568.9 388 72.7
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 3.8e-160 568.5 349 78.2
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 3.3e-159 565.5 347 78.7
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 5.5e-159 564.7 363 76.0
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 9.5e-159 563.9 374 74.3
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 1.2e-158 563.5 385 74.3
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.2e-158 563.5 347 76.4
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.8e-158 562.4 379 75.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 6.1e-158 561.2 386 72.5
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.0e-157 560.5 376 74.7
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.8e-157 559.7 374 72.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 1.8e-157 559.7 385 73.0
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 3.0e-157 558.9 384 72.9
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 3.0e-157 558.9 357 75.1
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 5.2e-157 558.1 391 71.6
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.2e-157 558.1 373 75.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 8.9e-157 557.4 344 79.7
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.2e-156 557.0 373 74.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 2.0e-156 556.2 385 71.9
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.0e-156 556.2 374 71.9
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.6e-156 555.8 385 73.0
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 3.4e-156 555.4 347 75.8
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 3.4e-156 555.4 353 74.8
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 4.4e-156 555.1 363 73.3
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 4.4e-156 555.1 373 74.3
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 5.7e-156 554.7 385 72.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 5.7e-156 554.7 355 74.6
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 7.5e-156 554.3 373 74.0
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 7.5e-156 554.3 377 72.9
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.7e-155 553.1 380 72.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.2e-155 552.7 353 74.2
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 4.9e-155 551.6 383 70.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 1.1e-154 550.4 384 71.6
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.4e-154 550.1 343 77.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 1.4e-154 550.1 347 74.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.8e-154 549.7 373 73.7
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 2.4e-154 549.3 369 72.1
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.5e-153 545.4 360 74.4
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.7e-152 543.1 353 74.5
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 5.6e-151 538.1 365 74.5
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 9.5e-151 537.3 415 66.5
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 2.1e-150 536.2 353 74.8
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 3.1e-149 532.3 327 79.5
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 4.4e-148 528.5 353 73.7
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 1.7e-147 526.6 369 72.4
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 2.9e-147 525.8 357 73.9
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 3.7e-147 525.4 344 73.0
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 6.4e-147 524.6 344 73.5
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 9.2e-146 520.8 357 73.4
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 9.2e-146 520.8 373 71.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.6e-145 520.0 357 72.3
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.6e-145 520.0 372 69.9
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.7e-145 519.2 314 79.0
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.0e-144 515.8 364 69.2
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.9e-143 513.1 376 68.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.9e-143 513.1 387 68.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 7.3e-143 511.1 348 71.6
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.8e-141 506.5 353 72.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.8e-141 506.5 356 68.8
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 4.9e-139 498.4 439 61.0
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 6.4e-139 498.0 353 71.1
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 7.3e-135 484.6 267 89.9
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 9.5e-135 484.2 573 48.7
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.4e-133 480.3 385 65.2
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.4e-132 475.7 383 62.4
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.5e-129 465.7 292 78.4
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.3e-128 463.8 346 66.5
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.3e-112 409.8 361 61.5
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.9e-72 276.2 194 73.2
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 1.3e-67 261.2 374 43.9
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.5e-66 257.7 147 82.3
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.7e-59 234.2 176 65.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 8.5e-59 231.9 302 48.0
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.0e-55 220.7 190 63.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 5.9e-52 209.1 162 68.5
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 1.6e-41 174.5 112 75.9
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.5e-36 156.8 112 70.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.4e-32 144.8 384 28.9
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-32 143.3 194 45.4
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 2.8e-25 120.6 84 67.9
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.2e-23 115.2 80 66.2
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.7e-19 101.3 56 85.7
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 1.5e-10 71.6 95 45.3
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 5.6e-10 69.7 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 7.6e-07 59.3 62 45.2


User provided reference genes

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