Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 0.0e+00 1625.1 805 100.0
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 0.0e+00 1577.4 805 96.6
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 0.0e+00 1552.7 806 94.7
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 0.0e+00 1510.4 805 91.9
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 0.0e+00 1508.4 810 92.1
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 0.0e+00 1502.6 802 92.4
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1476.1 806 89.6
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 0.0e+00 1474.1 806 89.5
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1473.0 806 89.3
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 0.0e+00 1463.0 806 89.0
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 0.0e+00 1461.0 814 88.3
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 0.0e+00 1379.8 806 85.2
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 0.0e+00 1290.8 814 78.9
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 0.0e+00 1208.7 812 72.9
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 6.6e-308 1060.4 821 63.2
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.8e-305 1052.4 822 64.0
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 8.4e-303 1043.5 824 62.9
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 4.2e-302 1041.2 824 63.1
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 8.7e-300 1033.5 824 62.4
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 8.7e-300 1033.5 824 62.5
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 1.1e-299 1033.1 822 63.1
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.3e-299 1031.2 822 62.4
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 4.3e-299 1031.2 819 62.1
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 2.2e-295 1018.8 825 61.5
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.3e-292 1009.6 826 61.5
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-291 1006.1 821 61.4
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 5.7e-291 1004.2 821 61.1
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.7e-287 992.6 819 60.7
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.7e-287 992.6 820 60.6
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 3.2e-286 988.4 884 56.8
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 3.2e-286 988.4 828 59.4
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.0e-284 983.4 820 58.8
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.6e-282 976.1 818 59.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 2.2e-282 975.7 820 58.8
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 4.8e-282 974.5 827 58.3
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 4.8e-282 974.5 818 59.7
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.0e-280 969.1 824 58.6
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 2.6e-280 968.8 817 59.4
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 4.5e-280 968.0 818 58.7
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.9e-280 967.6 824 58.5
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 5.9e-280 967.6 819 59.7
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 5.9e-280 967.6 819 59.1
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 7.7e-280 967.2 791 61.4
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.7e-279 966.1 817 59.1
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 5.1e-276 954.5 818 59.2
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 1.3e-274 949.9 822 56.8
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.1e-273 946.8 823 58.2
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.4e-273 946.4 819 58.5
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 1.2e-272 943.3 817 58.9
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 2.0e-272 942.6 823 57.7
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 7.7e-272 940.6 821 56.8
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.2e-270 935.3 814 55.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.6e-269 932.9 818 57.3
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 2.7e-269 932.2 827 58.0
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 3.6e-269 931.8 849 56.9
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 3.0e-268 928.7 820 56.6
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 3.0e-268 928.7 819 57.3
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 6.7e-268 927.5 862 55.5
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.0e-267 926.0 815 57.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.2e-266 922.5 816 57.0
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.2e-266 922.5 820 57.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 8.2e-266 920.6 819 55.6
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.4e-265 919.8 822 57.4
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.4e-265 919.1 819 56.9
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 4.1e-265 918.3 821 56.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 1.6e-264 916.4 818 56.2
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 3.5e-264 915.2 818 57.2
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 4.5e-264 914.8 814 56.0
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 3.8e-263 911.8 824 55.9
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 1.9e-262 909.4 823 55.8
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 9.4e-262 907.1 816 55.4
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 4.7e-261 904.8 818 56.6
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 4.7e-261 904.8 807 56.4
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 8.0e-261 904.0 836 56.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.0e-260 903.7 816 56.0
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.8e-260 902.9 819 54.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 2.3e-260 902.5 824 55.7
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 3.0e-260 902.1 824 56.1
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 3.3e-259 898.7 823 56.9
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.3e-258 894.4 882 53.2
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 1.1e-257 893.6 820 56.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.1e-257 892.1 823 56.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.7e-255 886.3 816 54.9
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.9e-255 885.6 825 56.0
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.3e-250 870.2 831 53.9
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.5e-246 854.7 810 56.3
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.1e-245 851.3 842 55.3
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.0e-244 849.0 811 55.9
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 2.5e-238 829.3 813 52.2
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 2.3e-236 822.8 818 52.1
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.0e-236 822.4 809 60.1
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.5e-230 802.7 818 52.3
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 1.0e-228 797.3 589 66.2
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.7e-226 790.0 827 50.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.4e-225 786.9 820 49.1
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 7.0e-225 784.6 822 50.5
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.0e-223 780.8 823 48.7
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.3e-222 775.8 832 49.6
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 7.3e-222 774.6 629 59.1
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 1.5e-219 766.9 814 53.2
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.4e-219 765.4 820 50.6
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 4.7e-213 745.3 752 53.2
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 5.8e-203 711.8 564 62.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 1.4e-201 707.2 894 45.3
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 6.0e-200 701.8 666 54.8
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.3e-199 700.7 809 50.8
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 2.1e-192 676.8 822 45.3
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 9.6e-182 641.3 813 48.1
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 3.3e-174 616.3 827 41.5
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 7.9e-168 595.1 464 64.0
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.6e-152 544.3 847 37.4
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 2.6e-142 510.4 585 46.8
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 8.2e-141 505.4 854 36.4
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 6.1e-136 489.2 341 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 2.0e-134 484.2 837 37.3
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.6e-131 474.6 479 51.8
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 6.3e-125 452.6 836 34.4
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.1e-111 407.1 410 53.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 5.2e-111 406.4 270 80.4
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 7.5e-110 402.5 269 79.9
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 8.3e-109 399.1 269 79.9
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 7.3e-97 359.4 682 33.1
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 5.8e-94 349.7 415 46.7
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 7.1e-68 263.1 747 28.9
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 2.2e-56 224.9 151 68.9
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 6.1e-51 206.8 839 23.8
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.7e-45 188.7 209 47.4
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.1e-44 186.0 161 58.4
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 2.1e-43 181.8 197 48.2
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.5e-41 175.6 461 30.2
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 5.3e-39 167.2 106 82.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 1.7e-37 162.2 106 80.2
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 5.7e-33 147.1 104 65.4
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.2e-24 118.6 135 46.7
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 5.3e-23 114.0 139 41.7
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 3.5e-22 111.3 94 59.6
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.9e-21 108.2 63 88.9
CARHR240490 Cardamine hirsuta HOM05D004893 ORTHO05D006320 8.3e-16 90.1 77 58.4
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-12 79.3 145 35.2
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.2e-11 76.3 66 53.0
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 2.1e-11 75.5 101 49.5
BcaC09g48066 Brassica carinata HOM05D014782 ORTHO05D031875 3.6e-11 74.7 117 46.2
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.4e-10 72.8 49 65.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-10 72.4 49 65.3
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 5.2e-10 70.9 40 87.5
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 5.2e-10 70.9 40 87.5
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.5e-09 69.3 94 42.6
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.1e-07 61.2 73 41.1
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 9.2e-07 60.1 53 50.9
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 3.5e-06 58.2 40 65.0


User provided reference genes

Program Settings