Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.1e-145 520.0 285 100.0
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 3.1e-143 511.9 285 99.3
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.1e-137 493.4 285 95.8
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.0e-129 466.1 285 91.6
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.6e-129 465.7 285 91.2
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.4e-124 447.2 285 89.5
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-123 446.8 285 88.8
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.1e-123 446.0 285 88.4
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 4.7e-123 444.9 285 89.8
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 7.5e-121 437.6 285 87.0
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 7.5e-121 437.6 285 87.0
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 8.3e-120 434.1 285 87.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 7.5e-113 411.0 258 88.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.7e-109 399.8 257 85.2
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 3.8e-109 398.7 275 80.0
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 3.3e-108 395.6 275 81.1
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 4.3e-108 395.2 278 79.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.3e-108 395.2 278 79.1
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 9.5e-108 394.0 274 80.7
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.6e-107 393.3 275 80.0
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 2.1e-107 392.9 275 80.0
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.6e-107 392.1 272 80.1
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.0e-106 390.6 275 80.0
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.8e-106 389.8 278 78.4
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 2.3e-106 389.4 270 80.7
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 6.8e-106 387.9 268 80.2
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.2e-105 387.1 272 78.7
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.5e-105 386.7 285 76.5
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 2.0e-105 386.3 270 78.9
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.7e-104 383.3 275 77.8
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.2e-104 382.9 270 78.5
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.9e-104 382.5 275 77.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.9e-104 382.5 255 82.0
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 6.4e-104 381.3 270 78.1
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 6.4e-104 381.3 270 78.1
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 8.3e-104 380.9 270 78.5
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.1e-103 380.6 272 77.6
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.9e-103 379.8 270 77.8
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.9e-103 379.8 270 77.8
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 1.9e-103 379.8 270 77.8
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.4e-103 379.4 274 77.4
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.1e-103 378.6 271 77.5
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 4.1e-103 378.6 272 77.2
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 7.0e-103 377.9 270 77.4
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.2e-102 377.1 272 77.9
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.0e-102 376.3 270 77.8
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 3.5e-102 375.6 278 74.5
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 3.5e-102 375.6 280 75.4
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 4.6e-102 375.2 272 76.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 4.6e-102 375.2 271 76.8
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 6.0e-102 374.8 272 76.5
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 7.8e-102 374.4 278 74.5
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 2.3e-101 372.9 281 74.4
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 3.0e-101 372.5 272 75.0
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 5.0e-101 371.7 272 76.5
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 6.6e-101 371.3 272 76.5
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.5e-100 370.2 270 76.7
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.5e-100 370.2 270 77.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.9e-100 369.8 270 74.8
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 1.9e-100 369.8 273 76.2
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.5e-100 367.5 271 74.5
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.2e-99 367.1 272 76.5
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 2.1e-99 366.3 275 74.9
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 2.1e-99 366.3 254 78.7
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 2.8e-99 365.9 287 73.9
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 4.7e-99 365.2 257 79.0
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.1e-98 364.0 297 70.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.4e-98 363.6 275 74.5
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.4e-98 363.6 278 72.3
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-98 362.8 272 75.0
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 4.0e-98 362.1 275 74.2
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.8e-98 361.3 270 74.8
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 8.9e-98 360.9 278 72.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 2.0e-97 359.8 258 76.7
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 5.8e-97 358.2 270 74.1
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.3e-96 357.1 251 78.5
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.3e-96 357.1 270 74.1
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.7e-96 356.7 270 73.0
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.2e-96 356.3 257 76.7
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.2e-96 356.3 272 74.6
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 4.9e-96 355.1 286 71.7
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 5.4e-95 351.7 272 73.5
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 7.0e-95 351.3 272 73.9
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 7.0e-95 351.3 251 76.9
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.2e-94 350.5 272 73.2
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.2e-94 350.5 246 78.9
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 7.8e-94 347.8 256 75.8
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 1.0e-93 347.4 255 76.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.3e-93 347.1 256 76.2
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.3e-93 346.3 247 77.3
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 6.6e-93 344.7 242 78.9
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.3e-92 341.3 258 74.8
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 9.5e-92 340.9 242 78.1
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 9.5e-92 340.9 242 78.1
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.6e-91 340.1 270 71.1
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.7e-91 338.6 264 71.2
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 1.4e-90 337.0 257 74.7
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 5.2e-90 335.1 263 72.2
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 6.8e-90 334.7 270 70.7
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 6.8e-90 334.7 272 70.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.5e-89 333.6 249 73.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 9.9e-89 330.9 246 75.2
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.3e-88 330.5 260 72.7
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.9e-88 329.3 234 77.8
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.1e-87 327.4 240 75.8
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.1e-87 327.4 257 72.8
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 4.1e-87 325.5 253 70.8
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 5.4e-87 325.1 256 71.9
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.1e-87 324.7 232 77.6
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 3.5e-86 322.4 218 80.7
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 2.3e-85 319.7 258 72.1
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 3.9e-85 318.9 270 67.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 6.6e-85 318.2 277 66.8
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.3e-84 315.5 232 75.0
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 9.5e-84 314.3 283 66.8
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-82 310.8 283 64.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.4e-82 309.7 253 69.6
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 1.5e-81 307.0 257 70.0
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.6e-81 306.2 264 68.2
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.4e-80 301.2 270 64.1
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 5.4e-79 298.5 217 74.2
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.1e-78 296.6 224 74.1
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.7e-77 291.2 266 63.2
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 1.2e-73 280.8 276 58.3
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.8e-73 278.5 279 60.2
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 1.6e-70 270.4 255 62.7
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.7e-70 269.6 227 69.2
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 3.9e-69 265.8 174 81.0
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.6e-69 265.0 215 69.3
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.3e-68 262.7 276 58.7
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 3.6e-67 259.2 196 74.0
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 1.3e-64 250.8 251 57.4
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.8e-64 249.2 270 55.9
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.5e-62 242.7 239 61.1
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 6.2e-59 231.9 172 75.0
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 5.3e-58 228.8 241 58.5
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.6e-57 224.9 195 68.7
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.9e-56 223.0 173 74.0
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 4.6e-46 189.1 191 60.7
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.5e-44 184.1 124 80.6
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.3e-36 156.4 118 71.2
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 8.2e-35 151.8 132 66.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 4.1e-34 149.4 127 66.9
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.2e-27 127.1 101 70.3
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 2.0e-25 120.6 96 67.7
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 5.9e-25 119.0 72 90.3
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.0e-20 104.0 79 74.7
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 4.5e-17 92.8 93 58.1
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 2.2e-16 90.5 81 63.0
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.6e-14 83.2 130 45.4
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 3.6e-14 83.2 105 52.4
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 3.0e-13 80.1 58 77.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.5e-12 75.5 98 51.0
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 4.8e-11 72.8 52 69.2
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.4e-10 71.2 42 81.0
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.8e-10 70.9 64 67.2


User provided reference genes

Program Settings