Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 7.6e-109 397.1 193 100.0
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 4.2e-107 391.3 193 99.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.3e-105 386.3 193 97.4
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 6.6e-105 384.0 193 96.4
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 2.5e-104 382.1 193 96.9
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 1.3e-103 379.8 193 95.9
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 2.0e-101 372.5 193 91.7
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 9.9e-101 370.2 193 91.7
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 9.9e-101 370.2 193 91.7
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 9.9e-101 370.2 193 91.7
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.2e-99 365.2 193 90.2
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.2e-99 365.2 193 89.6
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.6e-98 362.8 193 87.6
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 89.1
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 2.7e-98 362.1 193 89.1
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 7.9e-98 360.5 193 87.0
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 1.0e-97 360.1 193 88.6
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 89.1
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.3e-97 359.0 193 87.6
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 3.9e-97 358.2 193 87.6
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 5.1e-97 357.8 191 88.0
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 5.1e-97 357.8 193 88.1
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 6.7e-97 357.5 193 86.0
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 1.1e-96 356.7 193 86.0
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.5e-96 356.3 193 87.0
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 1.9e-96 355.9 193 86.5
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 86.5
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 85.5
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 87.0
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 2.5e-96 355.5 194 88.7
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 86.0
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 192 86.5
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 5.6e-96 354.4 193 85.5
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 5.6e-96 354.4 193 86.5
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 5.6e-96 354.4 193 88.6
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 7.4e-96 354.0 193 86.5
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.6e-95 352.8 190 86.8
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 2.8e-95 352.1 193 86.0
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 3.7e-95 351.7 190 85.8
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 85.5
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 4.8e-95 351.3 190 86.8
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 83.9
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 6.2e-95 350.9 190 85.8
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 8.1e-95 350.5 193 86.0
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.4e-94 349.0 190 86.8
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 83.9
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 4.0e-94 348.2 190 86.3
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 4.0e-94 348.2 193 83.9
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 5.3e-94 347.8 194 84.0
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 5.3e-94 347.8 193 85.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 85.8
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 85.8
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 85.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 1.2e-93 346.7 193 83.9
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 85.0
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 4.5e-93 344.7 190 84.7
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 5.8e-93 344.4 199 85.9
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 190 85.3
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 1.0e-92 343.6 193 83.9
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.7e-92 342.8 190 84.7
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.7e-92 342.8 190 84.7
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 4.9e-92 341.3 193 81.9
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 6.4e-92 340.9 193 83.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 8.4e-92 340.5 219 74.9
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 1.4e-91 339.7 193 82.4
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 1.9e-91 339.3 190 83.2
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.9e-91 339.3 193 83.4
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 3.2e-91 338.6 193 81.3
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 4.2e-91 338.2 193 82.4
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 4.2e-91 338.2 190 83.2
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 7.1e-91 337.4 190 83.7
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 7.1e-91 337.4 193 81.3
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 2.1e-90 335.9 197 81.7
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.8e-89 332.8 232 71.6
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 2.3e-89 332.4 193 81.3
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.3e-89 332.4 193 82.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 2.3e-89 332.4 193 82.9
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 2.3e-89 332.4 182 86.3
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 8.7e-89 330.5 190 81.6
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.1e-88 330.1 193 81.3
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.8e-87 325.5 210 75.2
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 3.7e-87 325.1 247 68.4
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.4e-86 322.4 193 79.3
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 9.0e-86 320.5 190 79.5
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 3.4e-85 318.5 177 81.9
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 1.3e-84 316.6 174 82.2
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 4.9e-84 314.7 193 79.3
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 3.2e-83 312.0 170 85.9
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 1.0e-81 307.0 164 87.8
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 3.0e-81 305.4 164 83.5
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 3.9e-81 305.1 197 78.2
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 3.9e-81 305.1 192 76.0
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.9e-80 302.8 194 76.3
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 3.3e-80 302.0 177 77.4
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 1.3e-79 300.1 190 77.4
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 1.5e-77 293.1 190 71.6
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 7.7e-77 290.8 167 82.6
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.0e-76 290.4 159 86.8
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 3.4e-69 265.4 159 79.9
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.7e-68 263.1 158 81.0
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 2.2e-68 262.7 164 79.3
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 5.5e-67 258.1 139 88.5
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.1e-66 256.1 156 78.8
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.8e-65 253.1 134 88.8
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 3.3e-64 248.8 194 64.4
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.8e-63 245.0 230 57.8
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 6.3e-63 244.6 170 67.6
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 9.4e-59 230.7 190 59.5
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 9.4e-59 230.7 170 62.9
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 4.7e-58 228.4 112 97.3
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.5e-56 223.4 190 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 7.4e-56 221.1 173 60.1
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 7.4e-56 221.1 133 80.5
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 5.0e-52 208.4 178 54.5
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.6e-50 202.2 166 60.8
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 6.8e-49 198.0 166 58.4
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 5.0e-44 181.8 110 76.4
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 5.5e-43 178.3 142 54.9
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 1.1e-38 164.1 144 52.1
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.0e-36 157.5 106 67.0
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 9.2e-30 134.4 167 45.5
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.2e-29 134.0 135 54.8
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 2.7e-29 132.9 126 56.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.7e-26 122.1 135 53.3
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.9e-25 117.9 132 50.0
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-22 109.0 70 74.3
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.0e-21 105.1 219 37.0
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.6e-20 101.7 123 48.0
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-18 97.1 135 43.7
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 4.0e-17 92.4 53 86.8
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 2.2e-15 86.7 50 82.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 6.4e-15 85.1 62 62.9
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 3.2e-14 82.8 57 64.9
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 4.4e-08 62.4 33 81.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.9e-07 58.9 102 36.3
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 4.1e-06 55.8 59 47.5
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 9.2e-06 54.7 34 76.5


User provided reference genes

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