Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.5e-90 336.3 177 100.0
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 8.3e-86 320.5 177 94.9
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 1.6e-84 316.2 177 93.8
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 5.0e-83 311.2 177 91.5
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 7.2e-82 307.4 173 92.5
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 3.6e-81 305.1 177 91.0
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 2.8e-78 295.4 177 86.4
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 3.5e-76 288.5 177 86.4
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 5.9e-76 287.7 177 86.4
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 1.3e-75 286.6 177 85.9
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 3.9e-75 285.0 174 87.9
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 5.0e-75 284.6 176 85.8
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 5.6e-74 281.2 176 85.2
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.2e-73 280.0 176 84.7
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.1e-73 279.3 176 84.1
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.1e-73 279.3 176 84.1
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 6.1e-73 277.7 166 83.7
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 5.8e-71 271.2 162 83.3
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 2.2e-70 269.2 162 82.1
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 3.7e-70 268.5 158 83.5
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 4.1e-69 265.0 164 81.1
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 5.4e-69 264.6 172 78.5
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 7.0e-69 264.2 161 79.5
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 9.2e-69 263.8 172 77.9
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 1.2e-68 263.5 165 79.4
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 3.5e-68 261.9 163 77.3
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 3.5e-68 261.9 161 80.1
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 7.8e-68 260.8 172 77.9
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 7.8e-68 260.8 163 79.1
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 7.8e-68 260.8 166 80.1
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.0e-67 260.4 161 80.7
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 1.0e-67 260.4 163 77.9
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 1.0e-67 260.4 177 74.0
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 1.3e-67 260.0 172 77.3
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 1.3e-67 260.0 165 78.2
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 1.7e-67 259.6 164 80.5
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 5.0e-67 258.1 161 78.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 6.6e-67 257.7 171 76.0
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 8.6e-67 257.3 159 78.6
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.1e-66 256.9 158 79.1
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 1.1e-66 256.9 162 76.5
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.5e-66 256.5 158 80.4
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.5e-66 256.5 196 68.9
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 1.9e-66 256.1 161 78.3
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 1.9e-66 256.1 161 78.3
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 2.5e-66 255.8 161 78.9
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 2.5e-66 255.8 161 77.6
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 4.3e-66 255.0 162 77.2
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 1.2e-65 253.4 162 76.5
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.1e-65 252.7 167 73.1
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.6e-65 251.9 171 73.1
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 3.6e-65 251.9 168 75.0
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 4.7e-65 251.5 164 73.2
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 4.7e-65 251.5 157 77.1
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 8.0e-65 250.8 174 73.0
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 8.0e-65 250.8 157 77.7
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.1e-64 250.4 160 76.9
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 1.4e-64 250.0 157 77.7
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 2.3e-64 249.2 161 75.2
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 2.3e-64 249.2 166 72.9
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 3.1e-64 248.8 157 76.4
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 3.1e-64 248.8 159 77.4
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 4.0e-64 248.4 161 74.5
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 5.2e-64 248.1 161 77.6
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 6.8e-64 247.7 156 75.6
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 8.9e-64 247.3 157 77.1
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 1.5e-63 246.5 177 71.2
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 4.4e-63 245.0 178 71.3
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 5.8e-63 244.6 168 75.0
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 9.8e-63 243.8 171 72.5
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 1.3e-62 243.4 171 73.1
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 1.7e-62 243.0 163 76.1
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 3.7e-62 241.9 157 76.4
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.7e-62 241.9 158 74.7
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 3.7e-62 241.9 169 68.6
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 4.9e-62 241.5 166 71.1
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 6.4e-62 241.1 171 71.9
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 8.3e-62 240.7 177 70.1
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 1.1e-61 240.4 167 74.3
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.4e-61 240.0 171 69.6
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 1.9e-61 239.6 167 71.9
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 3.2e-61 238.8 161 70.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 5.4e-61 238.0 164 70.7
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 5.4e-61 238.0 158 74.7
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 5.4e-61 238.0 158 74.1
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 9.2e-61 237.3 160 73.1
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 9.2e-61 237.3 159 73.0
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 1.2e-60 236.9 160 71.2
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 2.1e-60 236.1 162 74.1
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 2.1e-60 236.1 164 73.8
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 2.7e-60 235.7 159 73.0
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 7.8e-60 234.2 200 62.0
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 7.8e-60 234.2 155 74.2
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 1.7e-59 233.0 159 72.3
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 2.3e-59 232.6 158 72.8
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 2.3e-59 232.6 159 70.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 6.6e-59 231.1 158 72.2
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 8.6e-59 230.7 205 65.9
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 1.2e-57 226.9 171 70.2
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 1.2e-57 226.9 154 70.8
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.6e-57 226.5 160 70.0
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 1.6e-57 226.5 168 66.1
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 2.1e-57 226.1 179 73.2
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 1.4e-56 223.4 178 64.6
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 1.4e-56 223.4 213 59.2
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 1.8e-56 223.0 162 66.0
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 3.1e-56 222.2 161 70.8
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.1e-56 222.2 154 70.8
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 5.8e-55 218.0 120 92.5
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 5.8e-55 218.0 152 69.1
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 2.9e-54 215.7 156 67.9
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 3.7e-54 215.3 169 64.5
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.1e-53 213.8 157 65.6
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 4.1e-53 211.8 132 84.1
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 4.6e-52 208.4 152 66.4
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 4.6e-52 208.4 130 73.8
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 4.6e-52 208.4 138 76.8
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 7.8e-52 207.6 163 66.3
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.1e-50 203.8 156 63.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.5e-50 203.4 166 59.6
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 1.6e-49 199.9 161 65.2
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.6e-47 192.6 151 62.3
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 3.4e-47 192.2 149 65.8
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 4.9e-46 188.3 165 59.4
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 2.1e-44 183.0 128 65.6
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 6.0e-44 181.4 104 80.8
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 6.6e-43 177.9 149 61.7
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 6.2e-41 171.4 137 64.2
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 5.3e-40 168.3 109 78.9
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 2.6e-39 166.0 103 80.6
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 3.4e-39 165.6 114 84.2
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 7.6e-39 164.5 167 52.1
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 1.7e-38 163.3 158 56.3
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 3.2e-37 159.1 113 70.8
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.7e-36 156.0 163 49.1
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 6.0e-36 154.8 108 68.5
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 1.3e-35 153.7 157 51.0
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.3e-33 147.1 157 51.6
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.8e-33 146.0 114 67.5
FAN26G2067 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.1e-29 134.0 74 82.4
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 1.6e-28 130.2 87 80.5
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 4.6e-28 128.6 83 79.5
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 1.3e-27 127.1 109 62.4
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.1e-24 117.5 151 45.7
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 1.5e-23 113.6 89 69.7
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 4.2e-21 105.5 186 35.5
HanXRQChr17g0534461 Helianthus annuus HOM05D004708 ORTHO05D005573 6.0e-20 101.7 54 85.2
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 5.1e-19 98.6 59 84.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 5.1e-19 98.6 59 84.7
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 6.7e-19 98.2 69 69.6
CAN.G53.14 Capsicum annuum HOM05D004708 ORTHO05D005573 2.5e-18 96.3 54 81.5
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 5.7e-18 95.1 65 83.1
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 1.7e-14 83.6 112 46.4
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 1.9e-13 80.1 164 32.3
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.6e-12 77.0 52 76.9
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 6.1e-12 75.1 194 27.3
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 7.9e-12 74.7 45 77.8
PRCOL_00004729 Prasinoderma coloniale HOM05D004708 ORTHO05D005573 1.3e-11 73.9 169 32.0
Actinidia12710 Actinidia chinensis HOM05D004708 ORTHO05D005573 6.3e-09 65.1 48 64.6
arahy.Tifrunner.gnm1.ann1.7621NS Arachis hypogaea HOM05D054750 ORTHO05D005573 5.0e-06 55.5 32 84.4


User provided reference genes

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