Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.7e-66 253.8 125 100.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-61 238.8 125 93.6
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.7e-59 231.9 125 92.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 6.7e-58 227.3 125 89.6
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.1e-47 193.4 125 76.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.0e-45 186.8 125 76.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.7e-45 186.0 126 77.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.2e-45 185.7 126 77.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.8e-45 184.9 126 76.2
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-44 183.3 126 76.2
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-44 182.6 126 75.4
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-44 181.8 126 75.4
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-44 181.8 126 75.4
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-44 181.4 126 75.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-44 181.4 126 75.4
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.2e-44 181.4 126 75.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 7.2e-44 180.6 126 75.4
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 7.2e-44 180.6 126 75.4
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.2e-44 180.6 126 74.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 9.4e-44 180.3 126 74.6
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-43 179.9 126 74.6
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 74.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 74.6
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 74.6
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 74.6
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.1e-43 179.1 125 72.8
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-43 179.1 126 73.8
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-43 178.3 126 73.8
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.6e-43 178.3 126 75.4
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 71.4
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 71.4
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 71.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 71.4
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-41 172.6 126 70.6
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-41 172.6 126 70.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 70.6
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.1e-31 138.7 126 65.1
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.1e-28 130.2 127 59.1
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.6e-28 127.9 132 58.3
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.8e-22 107.5 80 71.2
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 3.3e-20 102.1 128 48.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.8e-18 96.3 138 42.8
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.8e-18 96.3 129 47.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.8e-18 96.3 124 46.8
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.1e-18 95.5 126 48.4
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.0e-18 95.1 130 47.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 4.0e-18 95.1 128 47.7
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 8.9e-18 94.0 127 45.7
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.2e-17 93.6 104 51.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.5e-17 93.2 127 46.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.5e-17 93.2 144 41.0
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.6e-17 92.4 137 46.0
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.4e-17 92.0 130 48.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.4e-17 92.0 127 43.3
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 5.8e-17 91.3 137 43.8
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.8e-17 91.3 140 44.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.8e-17 91.3 140 44.3
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.8e-17 91.3 125 45.6
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 7.5e-17 90.9 129 45.0
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 9.8e-17 90.5 138 44.2
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 9.8e-17 90.5 127 46.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.7e-16 89.7 122 45.1
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.7e-16 89.7 131 48.1
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.2e-16 89.4 121 45.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.2e-16 89.4 116 45.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.9e-16 89.0 135 44.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.9e-16 88.2 143 43.4
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 4.9e-16 88.2 124 45.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.9e-16 88.2 126 45.2
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 6.4e-16 87.8 136 45.6
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 8.3e-16 87.4 126 45.2
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.1e-15 87.0 137 43.8
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 1.1e-15 87.0 124 46.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.4e-15 86.7 121 46.3
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 134 47.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.4e-15 86.7 115 46.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.9e-15 86.3 134 41.8
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 2.4e-15 85.9 120 48.3
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-15 85.9 118 48.3
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.2e-15 85.5 125 45.6
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.4e-15 84.7 126 46.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 5.4e-15 84.7 124 45.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 7.0e-15 84.3 116 44.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 9.2e-15 84.0 119 43.7
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 9.2e-15 84.0 126 46.0
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.2e-14 83.6 122 44.3
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 124 44.4
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.6e-14 83.2 123 43.1
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.6e-14 83.2 126 42.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.1e-14 82.8 124 41.9
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.7e-14 82.4 131 42.0
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.7e-14 82.4 131 44.3
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-14 82.0 129 43.4
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.5e-14 82.0 117 42.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 4.6e-14 81.6 121 42.1
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.0e-14 81.3 133 41.4
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-13 80.1 127 44.1
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.7e-13 79.7 131 39.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.3e-13 79.3 145 38.6
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.3e-13 79.3 119 42.9
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.0e-13 79.0 131 42.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.0e-13 79.0 131 41.2
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.0e-13 79.0 121 42.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.0e-13 79.0 125 41.6
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.1e-13 78.2 132 39.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-12 77.0 131 41.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.1e-12 77.0 124 41.9
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-12 76.6 130 42.3
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-12 76.6 130 42.3
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-12 76.6 130 42.3
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 2.5e-12 75.9 138 39.1
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.5e-12 75.9 67 56.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.5e-12 75.9 128 42.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-12 75.1 130 41.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.3e-12 75.1 130 41.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 5.6e-12 74.7 66 56.1
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-11 73.6 132 41.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.2e-11 73.6 115 44.3
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.2e-11 73.6 115 44.3
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-11 72.4 129 38.8
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 8.1e-11 70.9 133 39.1
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.1e-11 70.9 129 38.8
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.1e-10 70.5 126 37.3
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-10 70.1 124 41.9
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-10 70.1 126 38.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-10 70.1 124 41.9
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-10 70.1 123 36.6
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-10 69.7 126 38.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.8e-10 69.7 125 40.8
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 2.3e-10 69.3 130 39.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.1e-10 68.9 123 41.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 6.8e-10 67.8 133 38.3
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.5e-09 66.6 116 39.7
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.8e-09 64.7 126 38.1
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 5.8e-09 64.7 126 34.9
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 5.8e-09 64.7 114 42.1
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 9.9e-09 63.9 129 32.6
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 9.9e-09 63.9 129 32.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 9.9e-09 63.9 129 32.6
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.3e-08 63.5 51 60.8
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.3e-08 63.5 113 41.6
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.7e-08 63.2 105 40.0
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.7e-08 63.2 116 37.1
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.7e-08 63.2 128 36.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 2.2e-08 62.8 157 32.5
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 6.4e-08 61.2 108 41.7
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 6.4e-08 61.2 123 38.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.3e-08 60.8 125 36.8
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-07 60.5 128 35.2
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.4e-07 60.1 125 37.6
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.4e-07 60.1 64 46.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.2e-07 58.9 128 36.7
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.2e-07 58.9 114 37.7
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 4.1e-07 58.5 129 34.9
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.1e-07 57.8 128 32.8
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 9.2e-07 57.4 100 41.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 9.2e-07 57.4 75 49.3
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 122 34.4
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 121 34.7
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 117 37.6
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.6e-06 56.6 122 36.9
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 2.7e-06 55.8 121 34.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.6e-06 55.1 115 35.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.6e-06 55.1 115 35.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.0e-06 54.7 124 33.9
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.0e-06 54.7 111 36.9
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 7.8e-06 54.3 112 35.7


User provided reference genes

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