Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.7e-95 352.8 196 100.0
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 1.3e-68 263.5 188 79.8
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 5.6e-67 258.1 157 84.7
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.1e-50 203.0 203 69.0
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 4.2e-46 188.7 185 63.8
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 7.1e-46 188.0 198 59.6
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 7.1e-46 188.0 198 59.6
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 2.3e-44 183.0 198 59.1
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 8.7e-44 181.0 198 58.6
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 8.7e-44 181.0 187 68.4
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 8.7e-44 181.0 176 61.9
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 1.3e-42 177.2 199 57.8
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 1.9e-38 163.3 154 61.7
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 1.9e-38 163.3 164 65.2
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 7.1e-38 161.4 151 68.2
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-37 160.6 151 62.3
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 3.5e-37 159.1 151 66.9
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 3.5e-37 159.1 151 66.9
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 3.9e-36 155.6 151 61.6
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 7.4e-35 151.4 197 50.8
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 1.6e-34 150.2 220 50.0
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 1.1e-33 147.5 220 49.5
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 1.1e-33 147.5 212 50.5
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.4e-33 147.1 212 50.9
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.4e-33 147.1 212 50.9
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 1.8e-33 146.7 195 50.8
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 3.1e-33 146.0 222 50.0
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 9.0e-33 144.4 220 46.8
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 4.5e-32 142.1 188 50.5
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.3e-31 140.6 245 44.9
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 1.7e-31 140.2 227 48.5
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 2.9e-31 139.4 236 46.2
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 2.9e-31 139.4 227 48.0
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 2.9e-31 139.4 170 52.4
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 3.8e-31 139.0 225 47.6
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 1.9e-30 136.7 224 46.4
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-29 134.0 225 46.2
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 1.2e-29 134.0 225 46.2
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 6.7e-28 128.3 219 48.4
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 6.7e-28 128.3 219 48.4
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 8.7e-28 127.9 192 50.0
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 1.5e-27 127.1 235 43.4
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 2.4e-25 119.8 172 53.5
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 1.1e-22 110.9 213 45.5
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 1.1e-22 110.9 159 49.7
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 1.9e-22 110.2 201 43.3
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.5e-22 109.8 159 49.7
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 4.2e-22 109.0 164 48.2
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.1e-22 108.2 159 56.6
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 9.3e-22 107.8 168 45.2
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 7.9e-21 104.8 176 45.5
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 5.1e-20 102.1 178 44.9
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 8.7e-20 101.3 157 43.9
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 4.3e-19 99.0 190 45.8
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.3e-18 97.4 158 51.9
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.6e-18 97.1 181 45.3
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 6.3e-18 95.1 162 43.8
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 6.3e-18 95.1 180 42.8
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 8.2e-18 94.7 203 40.9
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 1.4e-17 94.0 178 47.8
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.4e-17 94.0 158 50.6
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 4.1e-17 92.4 184 42.9
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.1e-17 92.4 164 45.1
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.3e-17 92.0 164 44.5
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 5.9e-16 88.6 173 39.9
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 7.7e-16 88.2 220 37.3
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 2.2e-15 86.7 171 40.4
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 2.9e-15 86.3 187 38.0
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 1.4e-14 84.0 174 42.5
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 1.9e-14 83.6 180 38.9
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.5e-14 83.2 174 41.4
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 3.2e-14 82.8 171 41.5
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 5.5e-14 82.0 149 40.3
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 7.2e-14 81.6 220 37.3
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 1.2e-13 80.9 209 36.4
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 1.6e-13 80.5 192 37.0
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 1.6e-13 80.5 172 39.0
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 7.9e-13 78.2 188 41.0
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 1.4e-12 77.4 161 46.0
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 3.9e-12 75.9 137 40.9
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 6.7e-12 75.1 205 37.6
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 8.8e-12 74.7 174 41.4
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 8.8e-12 74.7 179 36.9
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.5e-11 73.9 159 39.6
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 3.3e-11 72.8 154 40.3
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 5.7e-11 72.0 175 37.1
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 5.7e-11 72.0 168 38.7
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 7.4e-11 71.6 215 34.0
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 7.4e-11 71.6 151 39.1
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 1.7e-10 70.5 208 35.1
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.2e-10 70.1 149 36.9
Cpa.g.sc6.298 Carica papaya HOM05D003331 ORTHO05D003264 4.8e-10 68.9 167 37.7
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.8e-10 68.9 149 36.9
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.8e-10 68.9 149 36.9
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 6.3e-10 68.6 232 36.6
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 8.2e-10 68.2 155 41.9
Atru.chr13.244 Acer truncatum HOM05D003331 ORTHO05D003264 1.4e-09 67.4 204 39.7
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 1.4e-09 67.4 174 37.9
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 1.4e-09 67.4 204 36.3
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 2.4e-09 66.6 156 39.1
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 5.3e-09 65.5 157 40.1
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 5.3e-09 65.5 169 36.7
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 5.3e-09 65.5 154 39.0
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 5.3e-09 65.5 156 39.7
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 6.9e-09 65.1 196 36.2
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 6.9e-09 65.1 197 35.5
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 1.2e-08 64.3 179 34.1
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.2e-08 64.3 169 36.1
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 1.5e-08 63.9 190 36.3
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.0e-08 63.5 177 40.1
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 3.4e-08 62.8 165 37.0
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 7.7e-08 61.6 198 34.8
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 7.7e-08 61.6 186 36.0
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 1.3e-07 60.8 198 34.3
Sc03g0003730 Simmondsia chinensis HOM05D003331 ORTHO05D003264 2.2e-07 60.1 156 39.1
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 3.8e-07 59.3 166 32.5
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 5.0e-07 58.9 178 33.7
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 5.0e-07 58.9 194 35.1
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 6.5e-07 58.5 217 33.6
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 6.5e-07 58.5 157 37.6
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 8.5e-07 58.2 196 31.6
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 8.5e-07 58.2 173 34.7
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 1.1e-06 57.8 167 40.1
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 1.1e-06 57.8 152 34.9
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.4e-06 57.4 183 36.6
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 1.4e-06 57.4 152 38.2
SalBow3G2852 Salvia bowleyana HOM05D003331 ORTHO05D003264 1.4e-06 57.4 153 37.3
TPR.G10558 Trifolium pratense HOM05D003331 ORTHO05D003264 1.4e-06 57.4 208 35.6
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 1.9e-06 57.0 195 33.3
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 1.9e-06 57.0 210 35.7
Medtr7g015990 Medicago truncatula HOM05D003331 ORTHO05D003264 1.9e-06 57.0 59 54.2
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 2.5e-06 56.6 170 35.3
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 2.5e-06 56.6 184 37.5
CiPaw.08G068400 Carya illinoinensis HOM05D003331 ORTHO05D003264 3.2e-06 56.2 217 35.0
CDE02G3807 Ceratophyllum demersum HOM05D000531 ORTHO05D003264 4.2e-06 55.8 82 47.6
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 4.2e-06 55.8 185 37.3
HPP92_022194 Vanilla planifolia HOM05D003331 ORTHO05D003264 4.2e-06 55.8 174 35.6
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 7.2e-06 55.1 191 31.9


User provided reference genes

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