Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.2e-138 495.7 276 100.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 8.3e-101 370.9 327 70.9
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 3.8e-85 318.9 339 62.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.6e-67 258.8 309 64.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-55 220.3 289 60.2
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 3.4e-54 216.1 270 59.6
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.4e-52 210.7 270 59.3
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 7.1e-52 208.4 364 49.7
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.6e-51 207.2 285 62.1
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.3e-50 204.1 296 54.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 6.7e-50 201.8 296 54.1
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.5e-49 200.7 293 56.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.5e-49 199.9 292 55.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.5e-49 199.9 289 59.2
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 7.4e-49 198.4 289 58.8
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-46 189.5 295 57.3
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 2.9e-45 186.4 340 47.6
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.9e-44 183.7 336 46.7
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 6.1e-43 178.7 285 56.1
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 6.1e-43 178.7 285 56.1
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.4e-42 177.6 333 43.8
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 3.9e-42 176.0 188 66.5
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 5.1e-42 175.6 329 46.8
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.5e-41 173.3 363 41.9
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.4e-41 171.8 384 41.7
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-37 161.0 338 45.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.1e-28 131.3 320 43.4
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.7e-24 117.5 147 68.7
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.2e-24 117.1 255 45.5
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.2e-24 117.1 391 35.3
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 2.8e-24 116.7 255 45.1
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.7e-24 116.3 256 45.3
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 3.7e-24 116.3 299 42.5
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.1e-23 114.8 387 32.6
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.0e-22 110.5 391 33.2
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.6e-22 110.2 382 35.1
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 7.7e-22 108.6 300 39.7
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.0e-21 108.2 370 30.5
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-21 107.8 264 44.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.8e-21 106.3 375 31.7
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.0e-21 105.9 352 32.4
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 6.5e-21 105.5 270 43.3
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-20 104.8 406 31.8
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.5e-20 104.4 381 30.2
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 7.2e-20 102.1 374 31.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 9.4e-20 101.7 350 29.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.6e-19 100.9 375 30.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.7e-19 100.1 367 31.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 4.7e-19 99.4 388 34.5
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 6.1e-19 99.0 372 30.4
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 4.0e-18 96.3 396 31.1
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 5.2e-18 95.9 334 32.0
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 6.7e-18 95.5 368 29.1
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 6.7e-18 95.5 368 29.1
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.2e-17 94.7 363 30.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-17 94.0 375 29.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-17 94.0 375 29.9
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.6e-17 93.6 376 28.7
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 3.3e-17 93.2 345 30.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.7e-17 92.4 377 30.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 5.7e-17 92.4 383 29.0
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 7.5e-17 92.0 248 44.0
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 7.5e-17 92.0 248 44.0
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 7.5e-17 92.0 369 28.7
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 9.7e-17 91.7 376 28.5
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 9.7e-17 91.7 334 33.8
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.7e-17 91.7 345 28.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.3e-16 91.3 376 30.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.7e-16 90.9 376 30.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.2e-16 90.5 365 29.0
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.2e-16 90.5 373 30.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 2.8e-16 90.1 380 31.3
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.7e-16 89.7 254 42.1
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.7e-16 89.7 372 29.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 4.8e-16 89.4 383 31.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 8.3e-16 88.6 354 28.0
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.1e-15 88.2 389 29.6
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.1e-15 88.2 329 30.7
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.1e-15 86.7 356 30.6
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.1e-15 86.3 386 28.5
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 4.1e-15 86.3 300 28.3
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 5.3e-15 85.9 392 27.6
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 7.0e-15 85.5 383 31.6
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 9.1e-15 85.1 380 28.4
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.2e-14 84.7 379 33.0
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-14 84.7 379 33.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-14 84.7 379 33.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.2e-14 84.7 380 31.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.7e-14 83.6 370 28.1
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.7e-14 83.6 370 28.1
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.7e-14 83.6 395 28.9
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.7e-14 83.6 157 38.2
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.5e-14 83.2 385 28.8
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.5e-14 83.2 379 31.9
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 4.5e-14 82.8 381 33.1
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.9e-14 82.4 380 27.9
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 7.7e-14 82.0 314 33.4
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.7e-13 80.9 386 31.6
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 2.2e-13 80.5 313 34.8
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.2e-13 80.5 374 26.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.9e-13 80.1 314 33.1
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.9e-13 80.1 384 27.9
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.9e-13 80.1 366 28.1
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.9e-13 80.1 366 28.1
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 3.8e-13 79.7 328 30.8
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 3.8e-13 79.7 389 30.1
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 3.8e-13 79.7 362 28.7
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.8e-13 79.7 133 46.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.5e-13 79.0 314 33.8
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 6.5e-13 79.0 374 26.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-12 78.2 325 30.5
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.5e-12 77.8 373 27.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.5e-12 77.8 395 30.6
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 4.2e-12 76.3 366 27.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 4.2e-12 76.3 367 31.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 7.2e-12 75.5 390 30.8
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 9.4e-12 75.1 189 36.5
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.2e-11 74.7 393 27.0
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-11 74.7 388 30.9
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.6e-11 74.3 304 29.9
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.1e-11 73.9 384 30.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.1e-11 73.9 188 36.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.6e-11 73.2 392 30.9
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.1e-11 72.4 378 27.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 1.4e-10 71.2 286 30.1
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.8e-10 70.9 369 27.1
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.0e-10 70.1 372 27.2
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.0e-10 70.1 288 29.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 5.2e-10 69.3 204 29.9
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.8e-10 68.6 384 25.8
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.5e-09 67.8 387 27.6
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.5e-09 67.8 130 39.2
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 2.6e-09 67.0 357 24.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 9.8e-09 65.1 376 27.7
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.7e-08 64.3 281 32.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.2e-08 63.9 334 27.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 3.7e-08 63.2 346 28.0
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.8e-07 60.8 370 26.8
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.4e-07 60.5 364 31.0
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.4e-07 60.5 368 26.6
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 3.1e-07 60.1 128 41.4
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.0e-06 57.4 337 26.4
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.0e-06 57.4 374 26.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.7e-06 57.0 268 29.5
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.5e-06 56.6 186 32.3
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.9e-06 55.8 341 30.5


User provided reference genes

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