Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 8.1e-45 183.7 118 100.0
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 1.8e-44 182.6 118 99.2
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 1.8e-44 182.6 118 99.2
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 3.1e-44 181.8 118 99.2
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 3.1e-44 181.8 118 99.2
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 95.8
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 1.5e-43 179.5 118 96.6
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.0e-43 179.1 118 96.6
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.4e-43 178.3 118 95.8
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 5.8e-43 177.6 118 94.9
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 5.8e-43 177.6 118 90.7
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.9
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 7.5e-43 177.2 118 94.1
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.9
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 9.8e-43 176.8 118 94.1
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 1.3e-42 176.4 118 94.1
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.7e-42 176.0 118 94.1
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.9
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 1.7e-42 176.0 118 94.1
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 2.2e-42 175.6 118 94.1
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 2.9e-42 175.3 118 94.9
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 90.7
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 3.7e-42 174.9 118 94.1
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 4.9e-42 174.5 118 94.1
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 93.2
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 6.4e-42 174.1 118 92.4
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 86.4
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.1e-41 173.3 118 89.0
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.9e-41 172.6 118 93.2
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 88.1
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 93.2
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 7.1e-41 170.6 116 86.2
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 6.0e-40 167.5 116 92.2
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 93.2
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 90.7
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 90.7
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 90.7
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 90.7
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 89.0
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 89.0
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 89.8
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 83.1
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 1.1e-38 163.3 118 89.8
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.5e-38 162.9 118 76.3
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.8
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 87.3
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 86.4
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 89.0
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 87.3
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 88.1
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 5.6e-38 161.0 118 88.1
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 89.0
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 3.6e-37 158.3 118 86.4
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 3.6e-37 158.3 118 86.4
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 3.6e-37 158.3 118 87.3
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 4.0e-36 154.8 118 84.7
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 6.8e-36 154.1 116 81.0
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.5e-35 152.9 118 87.3
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.7e-34 149.4 118 83.1
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 6.4e-34 147.5 116 82.8
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 2.4e-33 145.6 150 59.3
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 3.2e-33 145.2 101 94.1
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.7e-31 139.4 103 89.3
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 6.6e-31 137.5 104 89.4
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 3.3e-30 135.2 102 91.2
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 1.6e-29 132.9 101 89.1
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 3.6e-29 131.7 101 89.1
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 6.2e-29 131.0 102 86.3
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 3.4e-27 125.2 118 72.9
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 8.4e-26 120.6 90 88.9
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 1.9e-25 119.4 108 71.3
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 5.4e-25 117.9 90 88.9
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 9.3e-25 117.1 118 72.0
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 1.6e-24 116.3 92 84.8
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 6.0e-24 114.4 92 79.3
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 2.4e-20 102.4 57 96.5
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 3.1e-20 102.1 119 57.1
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 5.3e-20 101.3 57 94.7
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 9.0e-20 100.5 57 94.7
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 9.0e-20 100.5 57 94.7
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.2e-19 100.1 99 61.6
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 4.5e-19 98.2 57 91.2
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.3e-18 96.7 57 91.2
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.3e-18 96.7 57 91.2
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 8.4e-18 94.0 57 87.7
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 2.7e-16 89.0 45 97.8
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 2.7e-16 89.0 45 97.8
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 6.0e-16 87.8 45 95.6
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 1.3e-15 86.7 45 95.6
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 1.8e-15 86.3 117 44.4
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 1.9e-14 82.8 120 44.2
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 3.3e-14 82.0 45 88.9
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 2.1e-13 79.3 96 68.8
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 2.8e-13 79.0 57 78.9
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 2.2e-10 69.3 47 78.7


User provided reference genes

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