Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.8e-67 257.3 140 100.0
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 3.9e-62 241.5 140 96.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.9e-53 212.6 146 84.2
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 2.2e-49 199.1 141 80.9
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.8e-49 198.4 140 81.4
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 6.4e-49 197.6 141 80.1
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 6.4e-49 197.6 141 80.1
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 6.4e-49 197.6 141 80.1
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.4e-48 195.7 145 76.6
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.6e-47 193.0 141 79.4
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 7.8e-47 190.7 139 78.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.7e-44 181.4 138 75.4
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.3e-38 162.5 145 66.2
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.6e-38 161.0 145 65.5
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 6.6e-38 161.0 144 66.7
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.6e-36 156.4 144 64.6
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.6e-36 155.2 143 64.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 8.1e-36 154.1 149 60.4
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 3.1e-35 152.1 148 58.1
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.2e-34 150.2 143 65.0
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.5e-34 149.8 139 61.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 9.3e-32 140.6 137 60.6
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.1e-31 139.4 139 59.7
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 2.1e-31 139.4 139 59.7
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.7e-31 139.0 137 60.6
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.5e-31 138.7 137 59.9
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 6.0e-23 111.3 141 52.5
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.1e-21 107.1 141 50.4
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.9e-21 106.3 139 50.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.9e-21 106.3 139 50.4
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.6e-21 104.8 145 46.9
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.7e-20 102.1 139 49.6
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 3.7e-20 102.1 136 50.7
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 8.1e-20 100.9 122 51.6
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-19 100.1 145 44.1
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 2.4e-19 99.4 138 49.3
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.4e-19 99.4 145 44.8
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 4.0e-19 98.6 127 47.2
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 4.0e-19 98.6 146 45.9
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 5.3e-19 98.2 151 46.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 5.3e-19 98.2 125 46.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.3e-19 98.2 143 45.5
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 5.3e-19 98.2 126 49.2
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.9e-19 97.8 122 50.0
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 6.9e-19 97.8 126 49.2
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 9.0e-19 97.4 142 45.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-18 97.1 145 44.1
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.2e-18 97.1 138 46.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.5e-18 96.7 125 46.4
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 3.4e-18 95.5 140 48.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.4e-18 95.5 125 47.2
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 3.4e-18 95.5 138 44.2
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 4.5e-18 95.1 144 42.4
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 4.5e-18 95.1 114 50.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.8e-18 94.7 138 47.8
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.8e-18 94.7 138 47.8
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 1.0e-17 94.0 139 47.5
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.3e-17 93.6 117 52.1
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.7e-17 93.2 114 49.1
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 2.2e-17 92.8 148 42.6
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.9e-17 92.4 129 46.5
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 2.9e-17 92.4 140 42.9
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 3.8e-17 92.0 151 44.4
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 4.9e-17 91.7 142 45.1
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 6.5e-17 91.3 126 45.2
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 6.5e-17 91.3 140 44.3
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.4e-16 90.1 111 45.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.4e-16 90.1 128 44.5
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.5e-16 88.2 125 43.2
Aa31LG8G14660 Aethionema arabicum HOM05D005114 ORTHO05D006301 7.1e-16 87.8 137 45.3
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 7.1e-16 87.8 133 43.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.1e-16 87.8 124 43.5
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 9.3e-16 87.4 150 40.7
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 9.3e-16 87.4 152 41.4
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.1e-15 86.3 136 41.2
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.1e-15 86.3 127 44.9
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 3.5e-15 85.5 135 43.7
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.5e-15 85.5 142 43.0
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 3.5e-15 85.5 137 41.6
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 4.6e-15 85.1 139 48.2
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 6.0e-15 84.7 124 47.6
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 7.9e-15 84.3 133 41.4
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.3e-14 83.6 120 44.2
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.3e-14 83.6 119 42.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.3e-14 82.8 124 50.0
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 3.0e-14 82.4 126 45.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 3.0e-14 82.4 123 45.5
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.0e-14 82.4 145 39.3
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 3.9e-14 82.0 128 43.8
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 5.1e-14 81.6 140 40.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 8.7e-14 80.9 140 40.7
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 8.7e-14 80.9 120 40.0
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 1.1e-13 80.5 126 40.5
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-13 79.7 124 45.2
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.5e-13 79.3 130 40.8
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 3.3e-13 79.0 121 44.6
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.3e-13 79.0 114 50.0
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 5.7e-13 78.2 120 42.5
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 7.4e-13 77.8 79 48.1
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 7.4e-13 77.8 125 39.2
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 9.6e-13 77.4 88 56.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 2.1e-12 76.3 79 48.1
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.7e-12 75.5 116 44.8
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 4.8e-12 75.1 152 37.5
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 6.3e-12 74.7 120 40.0
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 6.3e-12 74.7 141 40.4
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 2.4e-11 72.8 122 38.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.1e-11 72.0 120 42.5
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 4.1e-11 72.0 130 40.0
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 4.1e-11 72.0 139 35.3
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 4.1e-11 72.0 139 35.3
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 9.0e-11 70.9 130 39.2
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.5e-10 68.6 121 44.6
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 4.5e-10 68.6 114 39.5
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 5.9e-10 68.2 146 40.4
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 7.6e-10 67.8 96 46.9
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.3e-09 67.0 111 40.5
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.3e-09 67.0 133 38.3
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.7e-09 66.6 142 35.9
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.7e-09 66.6 106 40.6
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.9e-09 65.9 139 38.1
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 3.8e-09 65.5 140 37.9
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 8.5e-09 64.3 117 45.3
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.1e-08 63.9 139 37.4
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.9e-08 63.2 123 41.5
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 2.5e-08 62.8 90 51.1
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.5e-08 62.8 122 36.1
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.2e-08 62.4 113 41.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 4.2e-08 62.0 73 47.9
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 9.3e-08 60.8 90 50.0
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.7e-07 59.3 75 38.7
BcaNung06456 Brassica carinata HOM05D005114 ORTHO05D021810 1.3e-06 57.0 87 47.1
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 8.7e-06 54.3 148 31.8


User provided reference genes

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