Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.9e-196 689.1 371 100.0
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.3e-193 678.3 371 98.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 4.7e-192 674.5 371 97.0
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 1.3e-186 656.4 371 94.1
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 4.3e-185 651.4 371 93.5
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 9.6e-185 650.2 371 93.5
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 8.4e-181 637.1 371 92.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 8.4e-181 637.1 371 92.5
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.4e-180 636.3 371 92.2
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-180 635.2 370 92.4
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-179 631.7 371 90.8
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 6.0e-179 630.9 371 91.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 6.0e-179 630.9 371 91.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 7.8e-179 630.6 371 90.6
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.9e-178 628.2 371 90.0
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 6.6e-178 627.5 371 90.3
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 8.7e-178 627.1 371 89.8
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-177 626.7 373 91.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 6.2e-176 620.9 369 90.8
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 6.2e-176 620.9 369 90.8
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-175 619.8 369 91.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.5e-174 616.3 371 90.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 2.2e-173 612.5 369 89.7
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.1e-167 593.6 369 86.2
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 7.1e-156 554.3 371 80.9
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 2.8e-144 515.8 296 92.9
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 1.6e-139 500.0 366 75.1
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.6e-139 498.8 371 75.5
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 3.6e-139 498.8 372 74.7
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.4e-138 496.9 367 75.5
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 2.3e-138 496.1 366 75.1
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 3.0e-138 495.7 368 75.8
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 7.4e-137 491.1 374 74.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.3e-136 490.3 372 74.2
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.1e-135 485.7 367 74.1
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 3.4e-134 482.3 373 70.8
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-133 479.6 317 85.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 8.5e-133 477.6 365 73.7
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.1e-132 477.2 374 72.2
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.4e-132 476.9 366 73.0
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.9e-132 476.5 381 72.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.9e-132 476.5 344 77.0
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.4e-132 474.2 365 73.4
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 1.2e-131 473.8 344 76.5
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-131 472.6 358 74.3
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 2.7e-131 472.6 378 69.8
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.1e-131 471.5 376 69.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 7.9e-131 471.1 369 71.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.0e-130 470.7 374 71.1
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.8e-130 469.9 365 73.2
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.0e-130 469.2 372 71.8
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.0e-130 469.2 362 72.9
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 3.9e-130 468.8 371 71.4
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 5.1e-130 468.4 372 71.5
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 6.7e-130 468.0 359 71.9
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 6.7e-130 468.0 376 69.1
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 8.8e-130 467.6 374 69.5
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 8.8e-130 467.6 373 70.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.5e-129 466.8 372 69.4
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 2.0e-129 466.5 375 71.2
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.6e-129 466.1 372 71.0
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 4.4e-129 465.3 323 76.2
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 7.4e-129 464.5 360 72.2
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 1.3e-128 463.8 375 69.1
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.3e-128 463.8 358 72.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.2e-128 463.0 326 77.3
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 3.7e-128 462.2 373 72.1
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 4.8e-128 461.8 342 74.0
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 8.2e-128 461.1 328 76.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.1e-127 460.7 335 76.4
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 2.4e-127 459.5 378 69.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 3.1e-127 459.1 379 68.6
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 5.3e-127 458.4 327 76.5
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.1e-127 457.6 379 69.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 2.0e-126 456.4 375 70.4
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 7.7e-126 454.5 361 69.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.0e-125 454.1 323 77.4
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.8e-125 452.2 366 70.5
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 6.5e-125 451.4 373 67.6
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 6.5e-125 451.4 322 75.5
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 8.5e-125 451.1 292 84.2
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 8.5e-125 451.1 330 75.2
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 1.1e-124 450.7 370 67.8
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 1.9e-124 449.9 371 69.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 1.9e-124 449.9 373 69.2
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.9e-124 449.9 338 73.4
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.9e-124 449.9 326 73.9
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 3.2e-124 449.1 366 69.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.2e-124 448.7 322 75.8
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 9.4e-124 447.6 366 69.7
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.6e-123 446.8 341 72.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.6e-123 446.8 347 72.3
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.1e-123 446.4 370 67.8
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 2.1e-123 446.4 362 69.3
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.7e-123 446.0 382 67.3
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 2.7e-123 446.0 339 72.6
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 3.6e-123 445.7 341 73.6
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 3.6e-123 445.7 331 72.5
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 3.6e-123 445.7 352 71.0
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 4.7e-123 445.3 365 68.8
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.0e-123 444.5 378 68.0
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 8.0e-123 444.5 371 66.8
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.0e-122 444.1 371 70.1
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 1.4e-122 443.7 362 69.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 2.3e-122 443.0 351 70.7
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 2.3e-122 443.0 367 69.5
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 2.3e-122 443.0 329 73.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 3.0e-122 442.6 348 71.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 6.7e-122 441.4 345 71.3
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-121 440.7 349 66.2
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 6.3e-120 434.9 321 73.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.2e-120 434.5 373 66.8
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 3.1e-119 432.6 353 70.0
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 2.7e-118 429.5 353 68.0
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 3.8e-117 425.6 371 66.8
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 7.2e-116 421.4 331 71.0
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.6e-115 419.1 368 65.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 8.3e-112 407.9 358 65.6
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.8e-111 406.8 323 70.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.2e-109 399.8 378 60.3
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 4.0e-106 389.0 369 63.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 1.5e-105 387.1 329 65.0
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 7.5e-105 384.8 243 86.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 4.1e-103 379.0 359 61.6
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 2.0e-102 376.7 326 64.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.6e-97 359.8 345 59.4
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 7.0e-95 351.7 247 79.4
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 1.0e-93 347.8 330 60.3
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 8.3e-88 328.2 297 59.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 4.6e-86 322.4 335 57.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 5.0e-85 318.9 206 76.7
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.4e-81 305.8 337 54.6
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 3.2e-79 299.7 330 54.8
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.1e-74 284.6 324 54.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-71 273.1 242 59.9
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.9e-56 222.6 209 59.8
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.3e-53 214.5 261 49.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 3.0e-45 186.8 144 64.6
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 3.3e-44 183.3 165 59.4
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 2.6e-41 173.7 130 71.5
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 5.7e-36 156.0 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 7.2e-31 139.0 103 69.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-30 136.3 78 89.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.3e-28 129.8 89 70.8
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 4.1e-26 123.2 95 68.4
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.6e-25 120.6 68 88.2
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.0e-24 118.6 128 52.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-23 113.6 110 52.7
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-22 111.7 95 62.1
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 2.0e-20 104.4 65 81.5
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 7.4e-20 102.4 79 64.6
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 9.7e-20 102.1 126 48.4
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 3.1e-18 97.1 87 58.6
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.0e-17 94.4 282 31.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 1.1e-15 88.6 314 31.2
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 4.2e-15 86.7 269 32.7
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 2.6e-12 77.4 63 68.3
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 2.4e-10 70.9 177 35.0
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.1e-10 68.9 49 67.3
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 1.2e-09 68.6 69 56.5
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 49 67.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 59 57.6
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 2.6e-09 67.4 73 53.4
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-09 67.4 67 52.2
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 48 64.6
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.0e-08 65.5 50 64.0
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 6.5e-08 62.8 44 68.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.5e-08 62.8 49 63.3
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-07 61.2 50 60.0
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 4.2e-07 60.1 43 69.8
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 49 57.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 54.2
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 54.2
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 3.6e-06 57.0 67 68.7


User provided reference genes

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