Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 5.1e-54 214.5 141 100.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.0e-46 188.7 144 91.0
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 2.0e-42 176.0 141 89.4
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 7.9e-39 164.1 158 79.1
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.1e-38 161.4 116 76.7
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.1e-38 161.4 116 76.7
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 1.6e-36 156.4 119 76.5
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.1e-35 153.7 120 75.0
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.1e-35 151.8 119 74.8
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.1e-35 151.8 119 74.8
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.1e-35 151.8 119 74.8
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 9.0e-35 150.6 157 77.1
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-34 150.2 116 75.9
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 7.6e-34 147.5 155 76.1
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.3e-29 131.7 116 68.1
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.7e-28 128.6 116 67.2
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.7e-28 128.6 116 67.2
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.8e-25 118.6 109 61.5
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 4.2e-24 115.2 63 85.7
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 2.7e-23 112.5 87 71.3
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 6.1e-23 111.3 109 56.9
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.8e-22 109.8 104 65.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 2.3e-22 109.4 118 56.8
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.1e-21 107.1 101 59.4
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-21 106.7 109 56.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.5e-21 106.7 86 65.1
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 5.7e-21 104.8 111 54.1
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-20 102.4 109 56.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 3.7e-20 102.1 109 56.9
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.7e-20 102.1 114 56.1
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.2e-20 100.9 126 54.0
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 8.2e-20 100.9 90 63.3
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-19 100.5 109 56.0
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-19 99.8 86 64.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.8e-19 99.8 109 56.0
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.4e-19 99.4 65 76.9
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 3.1e-19 99.0 52 88.5
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.9e-19 97.8 106 53.8
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 9.1e-19 97.4 94 61.7
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 2.0e-18 96.3 61 80.3
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 2.0e-18 96.3 52 86.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 2.6e-18 95.9 58 77.6
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 3.4e-18 95.5 70 71.4
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.9e-18 94.7 96 57.3
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 7.7e-18 94.4 48 89.6
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.7e-17 93.2 53 79.2
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 2.2e-17 92.8 67 67.2
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.2e-17 92.8 78 65.4
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.8e-17 92.0 95 61.1
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 5.0e-17 91.7 111 53.2
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 6.5e-17 91.3 54 79.6
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.1e-16 90.5 94 60.6
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 1.4e-16 90.1 92 52.2
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 2.5e-16 89.4 85 58.8
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.5e-16 89.4 58 74.1
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 4.2e-16 88.6 98 58.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 5.5e-16 88.2 72 66.7
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.5e-16 88.2 67 68.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 5.5e-16 88.2 117 47.9
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 9.4e-16 87.4 115 53.0
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 9.4e-16 87.4 82 61.0
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.6e-15 86.7 77 62.3
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 1.6e-15 86.7 109 52.3
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.7e-15 85.9 85 58.8
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.6e-15 85.5 118 50.8
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.7e-15 85.1 50 82.0
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.1e-15 84.7 97 56.7
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 6.1e-15 84.7 62 66.1
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 7.9e-15 84.3 108 51.9
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.9e-15 84.3 116 49.1
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 7.9e-15 84.3 101 51.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 7.9e-15 84.3 107 47.7
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 1.4e-14 83.6 113 51.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 56 71.4
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 1.8e-14 83.2 47 83.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 1.8e-14 83.2 129 44.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.0e-14 82.4 77 58.4
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 6.7e-14 81.3 63 69.8
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.7e-14 81.3 63 69.8
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.7e-14 81.3 77 57.1
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 6.7e-14 81.3 71 63.4
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 6.7e-14 81.3 48 85.4
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 8.8e-14 80.9 82 54.9
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.1e-13 80.5 44 81.8
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 2.6e-13 79.3 102 47.1
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 3.3e-13 79.0 62 69.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.4e-13 78.6 50 76.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 5.7e-13 78.2 42 81.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 5.7e-13 78.2 97 52.6
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.4e-13 77.8 45 80.0
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 9.7e-13 77.4 62 64.5
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 1.3e-12 77.0 75 60.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.7e-12 76.6 45 77.8
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.7e-12 76.6 59 66.1
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.2e-12 76.3 39 84.6
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.2e-12 76.3 41 87.8
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.8e-12 75.9 45 77.8
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 2.8e-12 75.9 53 73.6
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 3.7e-12 75.5 122 46.7
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 4.8e-12 75.1 99 48.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 4.8e-12 75.1 48 75.0
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 6.3e-12 74.7 76 53.9
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 6.3e-12 74.7 59 64.4
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.3e-12 74.7 50 72.0
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.1e-11 73.9 87 49.4
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 1.1e-11 73.9 43 76.7
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.1e-11 73.9 82 47.6
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.1e-11 73.9 66 62.1
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.1e-11 72.4 42 81.0
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.1e-11 72.4 35 91.4
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.1e-11 72.0 36 88.9
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 4.1e-11 72.0 59 61.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 4.1e-11 72.0 37 86.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 7.0e-11 71.2 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 7.0e-11 71.2 35 91.4
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 7.0e-11 71.2 128 45.3
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 9.1e-11 70.9 40 82.5
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 9.1e-11 70.9 36 80.6
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.6e-10 70.1 78 53.8
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 2.0e-10 69.7 94 45.7
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 5.9e-10 68.2 36 77.8
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 5.9e-10 68.2 85 55.3
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.0e-09 67.4 35 80.0
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.0e-09 67.4 47 70.2
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.7e-09 66.6 83 51.8
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 6.5e-09 64.7 89 46.1
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.1e-08 63.9 39 71.8
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 4.7e-07 58.5 175 31.4
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 3.0e-06 55.8 42 66.7


User provided reference genes

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