Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 1.5e-289 998.8 506 100.0
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 6.1e-243 844.0 471 91.3
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 3.7e-240 834.7 507 85.8
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 9.2e-231 803.5 471 86.4
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 8.6e-229 797.0 502 82.5
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 1.2e-214 750.0 429 87.9
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.0e-213 745.3 500 76.6
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.0e-213 745.3 500 76.6
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 1.5e-212 743.0 470 80.0
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 1.5e-212 743.0 470 80.0
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 9.9e-209 730.3 474 79.1
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 5.3e-202 708.0 524 70.8
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 4.2e-175 618.6 410 77.6
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 2.2e-160 569.7 472 65.3
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.1e-151 540.8 429 62.2
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 5.7e-148 528.5 430 60.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 9.4e-143 511.1 429 59.2
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 1.6e-142 510.4 441 57.6
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 4.7e-142 508.8 429 58.7
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 2.6e-140 503.1 418 60.5
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.7e-140 501.9 418 58.6
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 2.4e-138 496.5 415 59.0
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 7.0e-138 495.0 420 60.5
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.2e-137 494.2 415 60.0
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.2e-137 494.2 415 60.0
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 3.5e-137 492.7 416 57.9
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 4.5e-137 492.3 443 56.2
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 2.9e-136 489.6 414 59.2
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.1e-135 487.6 418 58.1
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 1.9e-135 486.9 451 55.9
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 2.5e-135 486.5 417 59.7
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.7e-134 482.3 416 57.0
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.4e-133 480.7 416 56.7
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 6.8e-133 478.4 424 56.8
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.5e-132 477.2 416 56.7
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 3.4e-132 476.1 299 82.3
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.4e-132 476.1 416 57.0
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 4.4e-132 475.7 449 53.9
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 5.7e-132 475.3 418 56.7
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 7.5e-132 474.9 460 54.1
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 9.8e-132 474.6 414 56.0
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.3e-131 474.2 417 56.4
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.8e-130 470.3 416 56.7
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 5.0e-128 462.2 422 58.1
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 6.6e-128 461.8 417 53.7
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 5.2e-125 452.2 418 53.8
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.5e-124 450.7 439 51.9
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.3e-123 447.6 421 55.1
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.1e-122 444.5 421 55.1
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 6.6e-120 435.3 427 52.7
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 8.6e-120 434.9 417 54.9
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 1.5e-119 434.1 440 51.6
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 3.3e-119 433.0 419 53.0
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 9.5e-119 431.4 419 53.0
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 1.1e-117 427.9 417 51.8
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 3.1e-117 426.4 448 51.3
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 2.6e-116 423.3 445 51.5
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.4e-114 416.8 415 52.3
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.7e-113 413.3 416 51.4
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 7.8e-113 411.8 217 94.0
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 5.1e-112 409.1 440 49.8
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 4.3e-111 406.0 420 49.3
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 9.5e-111 404.8 415 49.6
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.2e-110 404.4 425 51.1
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 2.8e-110 403.3 416 49.8
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.7e-110 402.5 354 55.1
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 6.2e-110 402.1 426 51.2
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 4.0e-109 399.4 438 48.4
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 5.8e-108 395.6 441 47.6
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 3.7e-107 392.9 417 51.8
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.6e-105 387.5 417 49.4
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 4.6e-105 386.0 440 46.8
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 5.6e-103 379.0 419 47.0
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 2.4e-101 373.6 426 47.7
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 2.6e-100 370.2 416 48.8
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 8.4e-99 365.2 356 52.8
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.1e-98 364.8 413 48.9
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 9.3e-98 361.7 418 45.7
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 7.8e-97 358.6 417 47.7
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.6e-94 350.9 421 47.7
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.4e-90 337.8 415 45.8
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 9.3e-90 335.1 426 45.3
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 3.5e-89 333.2 436 42.2
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.0e-88 331.6 429 43.8
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.3e-88 330.5 415 44.6
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.3e-87 326.6 413 45.0
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 9.6e-87 325.1 416 44.7
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 3.6e-86 323.2 416 45.0
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 6.2e-86 322.4 416 44.7
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 1.4e-85 321.2 415 43.4
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 5.8e-84 315.8 418 41.9
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 8.4e-83 312.0 353 47.0
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.9e-71 274.2 248 54.4
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 3.3e-71 273.5 433 37.6
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 4.1e-69 266.5 236 54.7
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 5.0e-67 259.6 422 37.9
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 6.7e-64 249.2 280 46.4
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.5e-58 230.7 433 34.6
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.3e-55 220.3 185 58.9
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 5.9e-52 209.5 422 33.6
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.7e-46 191.4 177 51.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-35 155.6 170 45.9
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 9.1e-29 132.5 145 46.9
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.0e-28 131.3 171 43.9
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-27 128.3 177 40.7
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.7e-27 128.3 405 24.2
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.1e-26 125.6 199 39.2
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 3.0e-24 117.5 139 43.2
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-22 111.7 123 44.7
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-22 111.7 123 44.7
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-21 108.6 215 32.6
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.9e-20 103.2 131 43.5
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-19 101.7 133 42.9
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 2.5e-18 97.8 116 44.0
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 4.0e-16 90.5 120 38.3
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.5e-15 86.3 137 42.3
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.3e-14 85.5 84 48.8
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.3e-11 75.5 123 33.3
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 9.5e-10 69.3 164 29.9
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.8e-09 67.8 66 47.0
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 2.8e-09 67.8 91 38.5
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-08 65.1 103 35.0
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 2.3e-08 64.7 240 22.5
CAN.G1280.36 Capsicum annuum HOM05D004127 ORTHO05D005119 4.0e-08 63.9 245 22.0
Solyc06g009520.3 Solanum lycopersicum HOM05D004127 ORTHO05D005119 5.2e-08 63.5 240 22.5
PGSC0003DMG402007298 Solanum tuberosum HOM05D004127 ORTHO05D005119 5.2e-08 63.5 240 22.1
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 6.8e-08 63.2 140 32.9
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.5e-07 62.0 122 32.8
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 2.0e-07 61.6 119 31.1
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 2.0e-07 61.6 211 20.4
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 3.4e-07 60.8 228 22.8
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 3.4e-07 60.8 57 52.6
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 4.4e-07 60.5 94 31.9
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 4.4e-07 60.5 91 34.1
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 7.5e-07 59.7 91 34.1
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 7.5e-07 59.7 91 33.0
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 1.3e-06 58.9 238 23.9
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 1.3e-06 58.9 245 20.8
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 2.2e-06 58.2 91 34.1
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 2.2e-06 58.2 100 32.0
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 2.9e-06 57.8 91 33.0
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 2.9e-06 57.8 91 31.9
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 2.9e-06 57.8 94 30.9
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.9e-06 57.8 94 30.9
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.9e-06 57.8 94 30.9
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 3.7e-06 57.4 91 29.7
Nn4g25565 Nelumbo nucifera HOM05D004127 ORTHO05D005119 3.7e-06 57.4 245 21.6
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 3.7e-06 57.4 150 28.0
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 4.9e-06 57.0 94 29.8
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 4.9e-06 57.0 92 32.6
CARHR183130 Cardamine hirsuta HOM05D001779 ORTHO05D001753 6.4e-06 56.6 199 20.6
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 6.4e-06 56.6 91 31.9
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 6.4e-06 56.6 91 28.6
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 8.3e-06 56.2 65 40.0
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 8.3e-06 56.2 91 29.7
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 8.3e-06 56.2 94 31.9
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 8.3e-06 56.2 94 30.9
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 8.3e-06 56.2 91 31.9


User provided reference genes

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