Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.1e-90 336.7 171 100.0
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.8e-74 282.7 222 69.8
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 2.7e-73 278.9 223 70.0
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 5.0e-64 248.1 199 67.8
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 2.2e-59 232.6 224 58.5
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 6.2e-54 214.5 140 76.4
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 5.2e-53 211.5 137 75.9
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 5.2e-53 211.5 137 75.9
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 6.8e-53 211.1 137 75.9
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 1.5e-52 209.9 194 61.3
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 5.8e-52 208.0 221 57.0
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 7.3e-31 137.9 149 57.0
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 1.2e-28 130.6 149 55.0
BraA06t24527Z Brassica rapa HOM05D009038 ORTHO05D010897 2.7e-25 119.4 93 66.7
A06p13850 Brassica napus HOM05D009038 ORTHO05D010897 4.6e-25 118.6 93 65.6
A06p13660 Brassica napus HOM05D009038 ORTHO05D010897 2.3e-24 116.3 93 64.5
A06p13800 Brassica napus HOM05D009038 ORTHO05D010897 2.3e-24 116.3 93 64.5
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 2.3e-24 116.3 143 46.9
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 8.7e-24 114.4 191 42.9
Carub.0008s0659 Capsella rubella HOM05D009038 ORTHO05D010897 8.7e-24 114.4 78 76.9
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 4.3e-23 112.1 184 44.0
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 4.3e-23 112.1 136 51.5
BraA06t24517Z Brassica rapa HOM05D009038 ORTHO05D010897 7.4e-23 111.3 97 60.8
BraA06t24522Z Brassica rapa HOM05D009038 ORTHO05D010897 1.3e-22 110.5 103 58.3
A06p13710 Brassica napus HOM05D009038 ORTHO05D010897 1.6e-22 110.2 98 61.2
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 1.4e-21 107.1 157 47.1
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 1.4e-21 107.1 157 47.1
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 4.0e-21 105.5 147 47.6
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 4.0e-21 105.5 165 42.4
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 1.5e-20 103.6 157 45.9
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 1.5e-20 103.6 157 45.9
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 1.5e-20 103.6 120 46.7
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 5.8e-20 101.7 99 54.5
BraA06t24525Z Brassica rapa HOM05D009038 ORTHO05D010897 8.4e-19 97.8 131 45.0
BcaB07g34003 Brassica carinata HOM05D009038 ORTHO05D010897 5.5e-18 95.1 63 71.4
BcaB07g33996 Brassica carinata HOM05D009038 ORTHO05D010897 1.6e-17 93.6 68 70.6
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 1.9e-15 86.7 113 46.0
BcaB07g34000 Brassica carinata HOM05D009038 ORTHO05D010897 2.5e-15 86.3 64 68.8
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.1e-13 79.0 113 46.9
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 5.3e-13 78.6 133 42.1
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.2e-12 77.4 110 43.6
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.5e-12 77.0 119 42.9
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 2.0e-12 76.6 111 44.1
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.6e-12 76.3 101 44.6
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 4.5e-12 75.5 119 41.2
BcaC05g25695 Brassica carinata HOM05D000268 ORTHO05D000261 5.8e-12 75.1 112 41.1
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 1.0e-11 74.3 116 44.0
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.3e-11 73.9 113 42.5
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 5.0e-11 72.0 112 42.0
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 5.0e-11 72.0 104 43.3
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.4e-10 70.5 104 41.3
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.4e-10 70.5 116 40.5
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 1.4e-10 70.5 116 40.5
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 1.4e-10 70.5 104 43.3
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 1.9e-10 70.1 116 42.2
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 2.5e-10 69.7 123 38.2
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 3.2e-10 69.3 104 42.3
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.2e-10 69.3 114 42.1
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 3.2e-10 69.3 163 38.0
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 3.2e-10 69.3 104 40.4
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 7.1e-10 68.2 104 41.3
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 7.1e-10 68.2 133 41.4
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 1.2e-09 67.4 105 43.8
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.6e-09 67.0 104 40.4
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.6e-09 67.0 104 40.4
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.6e-09 67.0 77 48.1
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.1e-09 66.6 104 40.4
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 2.7e-09 66.2 138 35.5
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 2.7e-09 66.2 135 32.6
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 3.5e-09 65.9 105 41.0
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 4.6e-09 65.5 105 44.8
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 4.6e-09 65.5 91 45.1
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 6.1e-09 65.1 112 40.2
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.3e-08 63.9 103 39.8
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.3e-08 63.9 89 43.8
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 1.8e-08 63.5 86 45.3
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 2.3e-08 63.2 89 42.7
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 5.1e-08 62.0 132 38.6
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 6.7e-08 61.6 130 36.9
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 8.7e-08 61.2 88 42.0
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 1.1e-07 60.8 115 39.1
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 1.5e-07 60.5 80 45.0
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 1.9e-07 60.1 85 42.4
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 5.7e-07 58.5 87 39.1
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 7.4e-07 58.2 111 34.2
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 7.4e-07 58.2 87 40.2
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 9.7e-07 57.8 109 40.4
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 2.2e-06 56.6 68 48.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 4.8e-06 55.5 131 36.6
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 6.3e-06 55.1 169 29.6


User provided reference genes

Program Settings