Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.8e-39 164.9 84 100.0
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 3.9e-33 144.4 84 85.7
Carub.0003s3015 Capsella rubella HOM05D006691 ORTHO05D007620 2.6e-29 131.7 85 82.4
CARHR242800 Cardamine hirsuta HOM05D006691 ORTHO05D007620 4.4e-21 104.4 84 63.1
Thhalv10026702m.g Eutrema salsugineum HOM05D006691 ORTHO05D007620 7.5e-21 103.6 84 64.3
AL7G16600 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 3.7e-20 101.3 84 61.9
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 6.4e-20 100.5 84 59.5
BcaNung04921 Brassica carinata HOM05D006691 ORTHO05D007620 2.4e-19 98.6 84 60.7
BcaC01g00889 Brassica carinata HOM05D006691 ORTHO05D007620 3.2e-19 98.2 84 61.9
BcaNung00683 Brassica carinata HOM05D006691 ORTHO05D007620 5.4e-19 97.4 84 63.1
A01p03880 Brassica napus HOM05D006691 ORTHO05D007620 5.4e-19 97.4 84 64.3
C01p04190 Brassica napus HOM05D006691 ORTHO05D007620 5.4e-19 97.4 84 63.1
BraA01t00375Z Brassica rapa HOM05D006691 ORTHO05D007620 7.1e-19 97.1 84 63.1
BraA08t33636Z Brassica rapa HOM05D006691 ORTHO05D007620 9.2e-19 96.7 84 60.7
BcaB03g11823 Brassica carinata HOM05D006691 ORTHO05D007620 1.2e-18 96.3 84 58.3
A03p63030 Brassica napus HOM05D006691 ORTHO05D007620 1.6e-18 95.9 77 58.4
BraA03t15377Z Brassica rapa HOM05D006691 ORTHO05D007620 1.6e-18 95.9 77 58.4
C07p60660 Brassica napus HOM05D006691 ORTHO05D007620 1.0e-17 93.2 77 55.8
BolC7t46496H Brassica oleracea HOM05D006691 ORTHO05D007620 1.0e-17 93.2 77 55.8
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 1.0e-17 93.2 83 60.2
BolC3t20851H Brassica oleracea HOM05D006691 ORTHO05D007620 1.7e-17 92.4 86 55.8
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 4.7e-15 84.3 93 50.5
BolC1t00407H Brassica oleracea HOM05D006691 ORTHO05D007620 1.4e-14 82.8 87 56.3
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 1.8e-14 82.4 83 54.2
Sp7g32390 Schrenkiella parvula HOM05D006691 ORTHO05D007620 1.8e-14 82.4 61 60.7
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.6e-13 78.6 91 47.3
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.7e-12 75.9 85 48.2
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.2e-12 75.5 88 51.1
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 3.8e-12 74.7 90 46.7
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 4.9e-12 74.3 95 47.4
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.4e-12 73.9 89 49.4
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 8.4e-12 73.6 86 47.7
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 1.4e-11 72.8 90 45.6
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 1.4e-11 72.8 92 45.7
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 1.9e-11 72.4 92 51.1
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 1.9e-11 72.4 93 48.4
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 3.2e-11 71.6 89 46.1
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 3.2e-11 71.6 84 48.8
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 3.2e-11 71.6 85 48.2
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 4.1e-11 71.2 96 43.8
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 5.4e-11 70.9 92 45.7
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 7.1e-11 70.5 95 45.3
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 7.1e-11 70.5 84 47.6
C03p85630 Brassica napus HOM05D006691 ORTHO05D007620 9.2e-11 70.1 55 58.2
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 2.1e-10 68.9 95 42.1
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 2.1e-10 68.9 89 47.2
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 6.0e-10 67.4 87 48.3
A08p16710 Brassica napus HOM05D006691 ORTHO05D007620 6.0e-10 67.4 55 56.4
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 6.0e-10 67.4 89 47.2
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 6.0e-10 67.4 86 48.8
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 6.0e-10 67.4 90 45.6
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 7.8e-10 67.0 93 47.3
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.0e-09 66.6 85 48.2
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.0e-09 66.6 85 48.2
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.0e-09 66.6 93 46.2
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 1.3e-09 66.2 93 43.0
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 1.3e-09 66.2 82 48.8
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 1.3e-09 66.2 90 48.9
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.3e-09 66.2 84 48.8
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 1.3e-09 66.2 84 48.8
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.3e-09 66.2 92 42.4
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 1.3e-09 66.2 93 41.9
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 1.7e-09 65.9 90 43.3
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 2.3e-09 65.5 92 42.4
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 2.3e-09 65.5 88 45.5
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 3.9e-09 64.7 95 44.2
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 5.1e-09 64.3 86 44.2
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 5.1e-09 64.3 98 43.9
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.1e-09 64.3 98 43.9
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.1e-09 64.3 98 43.9
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.1e-09 64.3 98 43.9
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 5.1e-09 64.3 85 47.1
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 5.1e-09 64.3 77 48.1
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 6.6e-09 63.9 89 44.9
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 8.7e-09 63.5 87 44.8
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 8.7e-09 63.5 84 47.6
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 1.5e-08 62.8 98 42.9
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 2.5e-08 62.0 78 53.8
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 3.3e-08 61.6 87 42.5
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 5.6e-08 60.8 88 40.9
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 5.6e-08 60.8 98 44.9
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 7.3e-08 60.5 93 44.1
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 7.3e-08 60.5 86 44.2
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 9.6e-08 60.1 86 47.7
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 9.6e-08 60.1 91 40.7
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.2e-07 59.7 82 43.9
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 1.6e-07 59.3 98 40.8
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 2.1e-07 58.9 87 42.5
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 2.8e-07 58.5 93 38.7
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 8.1e-07 57.0 94 39.4
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 1.8e-06 55.8 79 44.3
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 1.8e-06 55.8 89 44.9
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 3.1e-06 55.1 32 78.1
MBI16_g36843_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 3.1e-06 55.1 88 36.4
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 6.9e-06 53.9 77 42.9
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 6.9e-06 53.9 33 72.7
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 6.9e-06 53.9 86 38.4


User provided reference genes

Program Settings