Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 0.0e+00 1355.1 760 100.0
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.7e-292 1008.1 782 76.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.9e-252 875.5 804 68.7
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 5.2e-238 828.2 783 64.2
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.2e-221 773.9 875 57.3
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 2.1e-207 726.5 858 58.2
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.2e-197 694.1 760 59.7
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 5.0e-196 688.7 757 59.6
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.5e-192 677.2 774 59.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 2.6e-189 666.4 771 59.1
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.9e-188 662.9 754 58.2
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 9.0e-113 412.1 850 41.3
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 3.2e-110 403.7 869 40.5
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 1.3e-108 398.3 861 41.1
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.7e-103 381.3 890 40.1
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 2.2e-103 380.9 883 41.0
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 5.1e-100 369.8 863 40.9
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 6.2e-98 362.8 871 38.8
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.4e-97 361.7 885 39.7
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.6e-96 357.5 872 40.6
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 5.1e-92 343.2 864 39.0
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 9.0e-89 332.4 849 38.0
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 4.6e-85 320.1 931 35.9
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.3e-79 302.0 914 35.6
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.9e-62 245.0 818 33.5
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 2.1e-61 241.5 877 31.7
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.1e-54 219.2 873 30.6
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.2e-51 209.1 900 30.4
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.5e-51 208.8 814 31.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 3.4e-51 207.6 879 30.4
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 4.4e-51 207.2 871 30.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.3e-50 205.7 871 31.2
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.7e-50 205.3 916 30.1
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 4.8e-50 203.8 868 31.6
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 8.3e-50 203.0 866 31.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.0e-48 198.4 881 29.2
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-47 194.5 878 29.4
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 6.5e-47 193.4 878 28.6
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 2.1e-45 188.3 898 30.6
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.8e-44 185.3 854 30.7
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.5e-43 182.2 905 29.7
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.7e-43 180.3 798 29.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.2e-42 178.3 901 30.0
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 4.9e-42 177.2 831 29.0
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.0e-41 173.3 850 29.1
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 1.2e-40 172.6 846 29.1
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.6e-40 172.2 856 29.1
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.6e-40 172.2 860 29.0
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 2.0e-40 171.8 864 29.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.8e-40 169.9 869 29.7
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 7.8e-40 169.9 862 28.5
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 1.0e-39 169.5 882 29.9
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.0e-39 169.5 880 29.0
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.7e-39 168.7 855 28.7
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.3e-39 168.3 878 28.7
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 3.8e-39 167.5 882 31.5
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.5e-38 165.6 847 28.5
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.8e-37 161.4 823 27.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 3.6e-37 161.0 903 27.1
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 3.6e-37 161.0 837 28.4
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.4e-36 159.1 798 28.9
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.0e-36 157.9 793 27.9
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 3.0e-36 157.9 879 29.1
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 5.8e-35 153.7 848 29.7
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 5.8e-35 153.7 792 29.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.5e-35 153.3 586 32.4
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 9.8e-35 152.9 857 27.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 6.4e-34 150.2 874 29.4
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 8.3e-34 149.8 975 25.9
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 8.3e-34 149.8 883 27.5
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 3.2e-33 147.9 877 27.7
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 1.2e-32 146.0 878 27.3
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.0e-32 145.2 834 27.5
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.0e-32 145.2 888 27.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.5e-32 144.4 871 26.8
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 1.0e-31 142.9 899 27.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 3.9e-31 141.0 814 28.3
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 3.6e-29 134.4 947 28.7
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 8.0e-29 133.3 919 26.8
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.1e-28 132.9 917 27.0
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 2.3e-28 131.7 848 26.1
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.0e-28 131.0 842 26.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 8.9e-28 129.8 868 29.3
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.6e-27 128.3 880 28.5
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.4e-27 127.5 814 26.9
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.4e-27 127.5 906 27.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 9.8e-27 126.3 872 27.8
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.9e-26 124.8 814 26.8
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 2.9e-26 124.8 897 28.7
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.1e-25 122.9 847 26.1
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 4.1e-25 120.9 256 39.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.0e-24 118.6 867 25.5
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.6e-24 117.5 855 27.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 7.8e-24 116.7 813 26.8
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 7.8e-24 116.7 821 26.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.0e-23 116.3 908 26.2
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 5.0e-23 114.0 845 25.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.3e-22 111.3 903 25.1
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 5.6e-22 110.5 876 26.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.6e-21 107.8 902 26.3
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.1e-20 106.3 920 26.5
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.1e-20 106.3 944 25.6
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 3.1e-20 104.8 438 29.5
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 6.8e-20 103.6 875 25.9
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 8.9e-20 103.2 344 31.4
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.5e-19 102.4 430 29.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 4.4e-19 100.9 859 27.5
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 5.8e-19 100.5 816 24.8
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 9.9e-19 99.8 777 25.7
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.2e-18 98.6 912 26.0
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.9e-18 98.2 932 24.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.7e-18 97.8 794 26.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 8.3e-18 96.7 923 25.4
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 8.3e-18 96.7 472 29.9
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 2.4e-17 95.1 958 24.8
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.7e-15 89.0 892 26.7
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.5e-14 85.9 147 47.6
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 5.6e-14 84.0 219 34.2
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.1e-13 82.0 539 27.1
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 2.1e-13 82.0 55 80.0
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 2.1e-13 82.0 243 30.9
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.1e-13 82.0 902 24.9
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.2e-10 72.0 55 70.9
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 3.2e-09 68.2 357 28.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 2.1e-08 65.5 265 29.4
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 3.5e-08 64.7 169 36.7
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 3.5e-08 64.7 813 23.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 4.6e-08 64.3 83 42.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 6.0e-08 63.9 723 23.4
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 7.8e-08 63.5 255 28.6
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 1.7e-07 62.4 213 31.5
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 3.0e-07 61.6 250 28.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 8.7e-07 60.1 105 39.0
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.5e-06 59.3 127 40.2
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.5e-06 58.5 210 31.4
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 2.5e-06 58.5 53 58.5
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 4.3e-06 57.8 191 31.4
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 7.3e-06 57.0 105 39.0
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 9.6e-06 56.6 200 27.5


User provided reference genes

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