Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 9.7e-39 163.3 102 100.0
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 8.2e-38 160.2 102 83.3
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 3.1e-37 158.3 102 97.1
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 5.3e-37 157.5 102 97.1
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.9e-34 149.1 102 81.4
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.9e-34 149.1 102 81.4
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.9e-34 149.1 102 81.4
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 9.4e-34 146.7 102 74.5
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 9.4e-34 146.7 102 74.5
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.6e-33 146.0 102 90.2
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 9.8e-31 136.7 102 86.3
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 2.8e-30 135.2 93 79.6
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 8.3e-30 133.7 93 91.4
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 8.3e-30 133.7 94 77.7
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 6.5e-27 124.0 102 65.7
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.1e-26 123.2 102 80.4
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 2.5e-26 122.1 102 78.4
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 9.5e-26 120.2 102 78.4
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 9.5e-26 120.2 91 87.9
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 9.5e-26 120.2 91 87.9
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 9.5e-26 120.2 91 87.9
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 9.5e-26 120.2 102 78.4
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 9.5e-26 120.2 91 87.9
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 5.2e-24 114.4 60 91.7
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 4.4e-23 111.3 102 73.5
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 5.7e-23 110.9 92 81.5
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.4e-21 105.5 93 74.2
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.1e-21 105.1 103 59.2
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 4.1e-21 104.8 104 59.6
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.2e-20 103.2 105 59.0
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 4.5e-20 101.3 92 77.2
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 7.8e-20 100.5 92 63.0
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 2.9e-19 98.6 92 76.1
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 6.6e-19 97.4 104 55.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-18 96.7 104 55.8
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.5e-18 96.3 93 73.1
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 2.5e-18 95.5 102 57.8
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 3.3e-18 95.1 104 56.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 9.5e-18 93.6 105 56.2
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 1.2e-17 93.2 104 54.8
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 2.1e-17 92.4 102 54.9
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 2.8e-17 92.0 105 52.4
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 4.7e-17 91.3 102 51.0
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 8.0e-17 90.5 98 55.1
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 1.0e-16 90.1 102 51.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 1.0e-16 90.1 106 52.8
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.4e-16 89.7 103 54.4
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 1.4e-16 89.7 101 51.5
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.8e-16 89.4 104 58.7
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.8e-16 89.4 92 71.7
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 3.0e-16 88.6 103 60.2
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 4.0e-16 88.2 94 56.4
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.0e-16 88.2 102 53.9
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 6.8e-16 87.4 104 52.9
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 8.9e-16 87.0 102 52.9
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 8.9e-16 87.0 94 57.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-15 86.7 104 50.0
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.2e-15 86.7 104 50.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.2e-15 86.7 104 53.8
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.0e-15 85.9 94 55.3
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 2.0e-15 85.9 95 53.7
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 2.6e-15 85.5 102 52.9
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.4e-15 84.7 102 52.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.8e-15 84.3 107 51.4
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 5.8e-15 84.3 94 54.3
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 5.8e-15 84.3 104 51.0
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 7.5e-15 84.0 102 52.0
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 7.5e-15 84.0 94 54.3
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.7e-14 82.8 109 48.6
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.7e-14 82.8 107 51.4
BcaNung04987 Brassica carinata HOM05D003477 ORTHO05D004043 2.2e-14 82.4 102 50.0
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.2e-14 82.4 94 53.2
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.9e-14 82.0 102 49.0
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-14 81.6 102 50.0
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.7e-14 81.6 94 53.2
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 3.7e-14 81.6 95 51.6
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 4.9e-14 81.3 111 46.8
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 4.9e-14 81.3 104 54.8
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 6.4e-14 80.9 107 50.5
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.1e-13 80.1 98 55.1
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.4e-13 79.7 100 52.0
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 51.0
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 49.0
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.8e-13 79.3 102 52.9
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 2.4e-13 79.0 102 51.0
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.4e-13 79.0 102 52.9
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 2.4e-13 79.0 102 49.0
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.4e-13 79.0 95 53.7
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.4e-13 79.0 93 52.7
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 3.2e-13 78.6 93 51.6
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 4.1e-13 78.2 102 51.0
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 7.0e-13 77.4 103 50.5
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 7.0e-13 77.4 99 56.6
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 7.0e-13 77.4 95 57.9
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 1.2e-12 76.6 96 52.1
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.2e-12 76.6 96 50.0
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 1.6e-12 76.3 101 49.5
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.6e-12 76.3 100 47.0
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.6e-12 76.3 107 48.6
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.6e-12 76.3 94 53.2
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 1.6e-12 76.3 94 53.2
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.5e-12 75.1 95 51.6
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 4.6e-12 74.7 102 47.1
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 6.0e-12 74.3 102 47.1
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 6.0e-12 74.3 93 52.7
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 3.0e-11 72.0 95 46.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.0e-11 72.0 93 51.6
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 5.0e-11 71.2 94 48.9
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 5.0e-11 71.2 91 53.8
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 8.6e-11 70.5 98 44.9
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 1.9e-10 69.3 92 48.9
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.9e-10 69.3 94 48.9
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 3.3e-10 68.6 94 46.8
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 3.3e-10 68.6 94 46.8
MELO3C031999.2 Cucumis melo HOM05D003477 ORTHO05D013069 4.3e-10 68.2 50 68.0
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 1.2e-09 66.6 97 43.3
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.1e-09 65.9 109 47.7
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.1e-09 65.9 90 50.0
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 2.1e-09 65.9 92 50.0
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.1e-09 65.9 87 43.7
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 2.1e-09 65.9 88 48.9
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 2.8e-09 65.5 92 47.8
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.8e-09 65.5 90 47.8
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.6e-09 65.1 94 45.7
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 6.2e-09 64.3 94 44.7
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 6.2e-09 64.3 62 54.8
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 6.2e-09 64.3 93 46.2
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 6.2e-09 64.3 96 63.5
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 8.0e-09 63.9 103 43.7
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 8.0e-09 63.9 93 46.2
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 8.0e-09 63.9 98 44.9
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 8.0e-09 63.9 94 50.0
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-08 63.5 94 50.0
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.1e-08 63.5 94 50.0
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.1e-08 63.5 92 44.6
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.1e-08 63.5 94 43.6
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.1e-08 63.5 79 46.8
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 1.4e-08 63.2 95 45.3
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.4e-08 63.2 95 42.1
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.4e-08 63.2 94 50.0
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 1.4e-08 63.2 93 50.5
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 1.8e-08 62.8 53 60.4
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.8e-08 62.8 95 44.2
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.8e-08 62.8 62 53.2
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.3e-08 62.4 96 47.9
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.3e-08 62.4 96 47.9
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 2.3e-08 62.4 94 45.7
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 2.3e-08 62.4 96 41.7
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 2.3e-08 62.4 62 53.2
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 3.1e-08 62.0 50 66.0
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 3.1e-08 62.0 104 41.3
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 3.1e-08 62.0 89 46.1
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 3.1e-08 62.0 61 52.5
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.0e-08 61.6 62 53.2
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 5.2e-08 61.2 96 41.7
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.8e-08 60.8 93 44.1
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 6.8e-08 60.8 97 48.5
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 1.2e-07 60.1 97 49.5
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 1.2e-07 60.1 90 48.9
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 2.0e-07 59.3 98 43.9
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.0e-07 59.3 96 40.6
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 2.0e-07 59.3 90 46.7
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.6e-07 58.9 93 43.0
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 4.4e-07 58.2 92 45.7
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.8e-07 57.8 92 44.6
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.8e-07 57.0 93 41.9
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.8e-07 57.0 98 39.8
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 9.8e-07 57.0 88 43.2
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.3e-06 56.6 92 43.5
TPR.G19065 Trifolium pratense HOM05D003477 ORTHO05D004043 1.3e-06 56.6 49 63.3
Actinidia27974 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.2e-06 55.8 38 68.4
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.9e-06 55.5 91 39.6
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.7e-06 55.1 86 46.5
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 3.7e-06 55.1 90 42.2
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 3.7e-06 55.1 87 46.0
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 4.9e-06 54.7 93 41.9
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 6.4e-06 54.3 83 42.2
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 8.3e-06 53.9 96 35.4
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 8.3e-06 53.9 100 51.0
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 8.3e-06 53.9 40 60.0


User provided reference genes

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