Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.4e-198 696.0 344 100.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.2e-192 676.4 344 96.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.4e-190 668.7 344 94.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 2.6e-184 648.7 344 91.6
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 5.4e-182 641.0 343 90.7
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.7e-181 638.6 344 91.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 6.6e-180 634.0 344 89.8
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 8.6e-180 633.6 344 89.8
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 8.0e-178 627.1 344 88.4
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 2.0e-176 622.5 336 90.8
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 3.4e-176 621.7 336 90.8
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.4e-176 621.7 338 89.3
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 2.3e-169 599.0 344 85.8
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 2.3e-169 599.0 344 85.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.3e-169 599.0 344 86.0
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.0e-169 598.2 344 86.0
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 6.8e-169 597.4 345 86.1
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 1.6e-162 576.2 336 86.0
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.8e-160 567.8 351 80.6
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.3e-156 555.8 355 79.7
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-152 543.1 323 84.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.6e-152 542.3 344 79.4
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 9.3e-150 533.9 344 77.6
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.1e-139 500.4 345 72.5
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.5e-139 500.0 344 72.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.3e-139 498.8 352 70.2
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 5.3e-137 491.5 351 70.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 4.5e-136 488.4 357 68.6
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 4.5e-136 488.4 344 70.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 5.8e-136 488.0 352 69.3
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 2.9e-135 485.7 347 69.5
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.9e-134 483.0 349 68.8
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-134 482.6 349 68.8
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.2e-134 482.3 357 68.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 4.2e-134 481.9 342 69.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 9.3e-134 480.7 344 68.9
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.7e-133 479.2 344 69.8
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.5e-133 478.8 354 66.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-132 476.9 350 68.3
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.8e-132 476.5 342 69.3
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.3e-132 476.1 355 69.0
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.3e-132 476.1 358 67.9
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.3e-132 476.1 360 67.5
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.9e-132 475.3 342 69.0
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.1e-132 474.9 345 69.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 6.7e-132 474.6 337 70.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.5e-131 473.4 344 68.9
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.9e-131 473.0 344 68.9
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 1.9e-131 473.0 343 69.7
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.9e-131 473.0 349 67.9
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.9e-131 473.0 352 67.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.9e-131 473.0 357 66.9
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.4e-131 471.1 353 67.4
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 7.4e-131 471.1 353 67.4
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 7.4e-131 471.1 354 66.1
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 9.6e-131 470.7 354 66.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.3e-130 470.3 354 67.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 8.1e-130 467.6 345 69.0
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.1e-129 467.2 355 67.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 1.4e-129 466.8 354 66.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 3.1e-129 465.7 354 67.5
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 6.9e-129 464.5 352 66.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.2e-128 463.8 345 66.7
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.6e-128 462.6 349 67.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.6e-128 462.6 337 70.3
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.3e-127 460.3 355 63.9
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.9e-127 459.1 346 68.2
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.8e-127 458.8 344 67.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 6.5e-127 458.0 351 66.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 8.4e-127 457.6 350 65.7
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.9e-126 456.4 353 64.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.5e-126 456.1 350 66.0
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.5e-126 456.1 346 66.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.5e-126 454.9 347 66.0
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.5e-126 454.9 349 65.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.5e-126 454.9 372 62.9
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 9.3e-126 454.1 363 64.7
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 9.3e-126 454.1 350 65.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.2e-125 453.8 340 67.1
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 6.0e-125 451.4 350 65.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 7.9e-125 451.1 355 64.2
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 1.0e-124 450.7 353 64.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.3e-124 450.3 359 63.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-124 449.1 346 65.9
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 3.9e-124 448.7 372 64.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-123 446.8 352 63.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.5e-123 446.8 374 61.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 4.3e-123 445.3 352 64.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.7e-123 444.9 350 64.9
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.3e-122 443.7 345 64.6
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.1e-122 443.0 372 62.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 5.3e-121 438.3 347 64.0
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.2e-120 437.2 353 62.3
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 4.5e-120 435.3 353 63.2
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 5.8e-120 434.9 353 63.2
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 7.6e-120 434.5 347 64.0
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.0e-119 434.1 353 62.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.3e-119 433.7 355 62.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.5e-119 431.4 376 59.8
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 5.5e-118 428.3 366 62.0
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 3.5e-117 425.6 366 61.7
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-116 423.3 349 64.2
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-115 419.9 338 64.5
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.6e-114 416.8 344 62.2
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 2.2e-114 416.4 345 61.2
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 3.7e-114 415.6 343 61.8
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 8.2e-114 414.5 346 63.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 2.4e-113 412.9 345 61.4
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 6.9e-113 411.4 350 60.3
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.2e-112 410.6 323 64.4
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.4e-112 409.1 372 57.0
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 7.2e-110 401.4 343 61.2
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.2e-109 400.6 350 60.0
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.1e-109 399.8 373 57.4
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.9e-109 397.9 372 59.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.3e-107 392.1 329 62.9
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 8.2e-106 387.9 416 52.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.1e-105 387.5 325 64.0
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-105 387.1 308 63.6
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.1e-105 386.0 365 55.3
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.3e-105 385.2 366 54.6
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.4e-104 382.5 354 57.3
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.0e-103 380.9 354 56.8
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.8e-103 379.0 525 44.8
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 4.7e-101 372.1 333 59.2
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 5.7e-99 365.2 344 56.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 4.8e-98 362.1 361 54.0
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.6e-96 356.3 326 58.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-94 350.9 430 48.1
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.1e-93 346.7 363 52.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.0e-92 342.4 412 48.3
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 3.8e-87 325.9 171 87.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 9.4e-86 321.2 369 49.9
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.4e-84 317.4 316 55.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 1.7e-79 300.4 342 50.3
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.5e-78 296.6 373 46.1
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 4.2e-78 295.8 375 44.8
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.1e-73 279.3 234 60.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 9.8e-67 258.1 227 64.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-66 257.7 250 57.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-66 257.7 250 57.6
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.5e-64 249.6 381 41.7
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.6e-64 249.2 306 50.0
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.0e-63 248.1 361 42.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.7e-61 239.2 214 63.1
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.6e-59 233.4 345 42.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 4.9e-58 229.2 212 53.3
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 3.5e-56 223.0 396 37.6
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.1e-54 218.0 213 56.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 5.2e-52 209.1 189 60.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.0e-47 194.9 173 61.8
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.5e-46 190.3 136 72.1
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.2e-37 161.4 133 56.4
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.8e-34 149.8 344 33.1
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.2e-33 146.7 71 85.9
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.4e-33 146.0 361 31.6
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.3e-30 136.7 121 57.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.5e-27 126.3 104 60.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 3.8e-18 96.7 84 61.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.9e-14 84.3 63 63.5
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 3.5e-08 63.5 33 78.8


User provided reference genes

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