Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 3.8e-84 314.7 147 100.0
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.2e-77 293.1 147 93.9
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 1.7e-76 289.3 147 91.2
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.5e-74 281.6 143 90.2
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 7.9e-74 280.4 147 89.1
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 7.9e-74 280.4 147 89.1
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.3e-73 279.6 147 88.4
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 2.3e-73 278.9 147 87.8
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 8.7e-73 276.9 147 88.4
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.9e-72 275.8 147 87.8
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 9.6e-72 273.5 140 88.6
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.0e-65 253.4 136 82.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.0e-61 239.2 154 70.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 1.7e-55 219.5 140 70.7
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.8e-55 218.0 140 70.0
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.3e-55 217.6 139 70.5
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 6.3e-55 217.6 138 68.8
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.1e-54 216.9 140 69.3
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.8e-54 216.1 147 68.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.8e-54 216.1 144 68.8
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 5.3e-54 214.5 146 67.8
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 9.1e-54 213.8 147 68.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.5e-53 213.0 142 67.6
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.5e-53 213.0 140 68.6
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.0e-53 212.6 144 66.7
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.0e-53 212.6 141 67.4
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.6e-53 212.2 118 77.1
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 2.6e-53 212.2 138 68.1
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.6e-53 212.2 142 69.0
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 7.7e-53 210.7 115 79.1
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 7.7e-53 210.7 143 64.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.0e-52 210.3 136 67.6
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 2.2e-52 209.1 136 68.4
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 2.9e-52 208.8 142 66.9
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.9e-52 208.8 144 67.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 2.9e-52 208.8 142 67.6
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 5.0e-52 208.0 143 67.8
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 2.5e-51 205.7 123 72.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 5.5e-51 204.5 142 65.5
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 7.2e-51 204.1 117 72.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 7.2e-51 204.1 136 67.6
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 9.4e-51 203.8 142 67.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 9.4e-51 203.8 142 68.3
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.2e-50 203.4 135 67.4
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.2e-50 203.4 145 66.2
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.1e-50 202.6 144 66.0
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.1e-50 202.6 143 65.0
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.7e-50 202.2 146 63.7
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 2.7e-50 202.2 136 65.4
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 3.6e-50 201.8 137 67.2
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 3.6e-50 201.8 115 74.8
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.4e-49 199.9 133 67.7
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.3e-49 199.1 136 64.0
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.3e-49 199.1 143 65.7
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 3.0e-49 198.7 142 64.1
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 3.0e-49 198.7 115 73.0
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 3.9e-49 198.4 135 64.4
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.9e-49 198.4 144 63.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.9e-49 198.4 140 65.0
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 3.9e-49 198.4 139 64.7
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 5.1e-49 198.0 136 63.2
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 5.1e-49 198.0 136 66.2
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 5.1e-49 198.0 148 64.2
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 6.7e-49 197.6 136 63.2
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 6.7e-49 197.6 122 71.3
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 6.7e-49 197.6 139 65.5
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 6.7e-49 197.6 140 67.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.1e-48 196.8 143 65.0
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.1e-48 196.8 134 66.4
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 1.5e-48 196.4 143 65.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.5e-48 196.4 115 70.4
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.0e-48 196.1 119 72.3
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.0e-48 196.1 143 63.6
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.4e-48 194.9 138 63.8
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.4e-48 194.9 143 65.7
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 5.7e-48 194.5 139 64.7
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 7.4e-48 194.1 140 62.9
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 9.7e-48 193.7 139 63.3
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 2.8e-47 192.2 139 63.3
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 6.3e-47 191.0 130 64.6
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.3e-47 191.0 115 73.0
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 8.2e-47 190.7 122 63.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.8e-46 189.5 139 64.0
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.8e-46 189.5 143 60.8
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 1.8e-46 189.5 136 60.3
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 2.4e-46 189.1 122 63.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.4e-46 189.1 139 61.9
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.2e-45 186.8 142 59.9
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.0e-44 183.7 142 59.9
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.7e-44 183.0 139 62.6
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.2e-44 182.6 151 57.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.2e-44 182.6 151 57.0
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 2.9e-44 182.2 145 60.7
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.1e-43 180.3 125 59.2
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.4e-43 179.9 132 62.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 1.4e-43 179.9 165 52.7
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.5e-43 179.1 132 62.1
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.2e-43 178.7 123 63.4
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.7e-42 175.6 109 67.9
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.1e-38 163.7 138 59.4
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 5.2e-33 144.8 146 52.1
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.2e-32 143.7 81 76.5
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 1.2e-32 143.7 124 55.6
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 9.7e-32 140.6 116 56.0
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.7e-31 139.8 81 75.3
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.2e-27 124.4 75 70.7
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 6.1e-26 121.3 114 43.9
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 2.6e-24 115.9 91 57.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 3.4e-24 115.5 96 49.0
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 4.4e-24 115.2 91 56.0
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 1.7e-23 113.2 135 43.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 2.2e-23 112.8 78 64.1
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 1.8e-22 109.8 89 50.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 7.7e-21 104.4 142 40.8
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 5.0e-20 101.7 55 76.4
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 1.1e-19 100.5 93 44.1
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.9e-19 99.8 138 42.8
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 5.5e-19 98.2 93 49.5
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 7.5e-16 87.8 91 40.7
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.2e-15 86.3 89 46.1
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 2.9e-12 75.9 67 52.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 3.8e-12 75.5 56 58.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 3.6e-10 68.9 41 73.2
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.0e-08 63.2 63 50.8
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 3.4e-08 62.4 70 42.9
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.1e-06 57.4 39 61.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.4e-06 57.0 62 48.4


User provided reference genes

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