Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G14260 Arabidopsis thaliana HOM05D006483 ORTHO05D007837 3.8e-201 704.5 330 100.0
AL3G45940 Arabidopsis lyrata HOM05D006483 ORTHO05D007837 1.6e-191 672.5 328 96.6
CARHR105280 Cardamine hirsuta HOM05D006483 ORTHO05D007837 1.1e-181 639.8 319 92.5
Sp3g27660 Schrenkiella parvula HOM05D006483 ORTHO05D007837 4.1e-179 631.3 323 91.0
Thhalv10022723m.g Eutrema salsugineum HOM05D006483 ORTHO05D007837 5.3e-179 630.9 325 89.8
Aa31LG8G12670 Aethionema arabicum HOM05D006483 ORTHO05D007837 1.0e-177 626.7 325 89.8
Carub.0003s2843 Capsella rubella HOM05D006483 ORTHO05D007837 2.9e-177 625.2 328 89.3
BolC3t17891H Brassica oleracea HOM05D006483 ORTHO05D007837 7.2e-176 620.5 319 90.6
A03p45170 Brassica napus HOM05D006483 ORTHO05D007837 1.2e-175 619.8 319 90.3
BraA03t13652Z Brassica rapa HOM05D006483 ORTHO05D007837 1.2e-175 619.8 319 90.3
BcaC01g03099 Brassica carinata HOM05D006483 ORTHO05D007837 2.1e-175 619.0 319 90.3
BcaB08g34553 Brassica carinata HOM05D006483 ORTHO05D007837 1.5e-173 612.8 327 88.1
C03p56040 Brassica napus HOM05D006483 ORTHO05D007837 3.1e-171 605.1 348 83.0
TWI59G1265 Tripterygium wilfordii HOM05D006483 ORTHO05D007837 1.2e-170 603.2 328 85.1
THA.LOC104819515 Tarenaya hassleriana HOM05D006483 ORTHO05D007837 6.5e-169 597.4 328 84.5
FAN24G1160 Fragaria x ananassa HOM05D006483 ORTHO05D007837 1.1e-168 596.7 313 85.0
FAN20G1555 Fragaria x ananassa HOM05D006483 ORTHO05D007837 4.2e-168 594.7 313 85.0
Gohir.D12G041300 Gossypium hirsutum HOM05D006483 ORTHO05D007837 5.5e-168 594.3 315 86.3
MD10G1115000 Malus domestica HOM05D006483 ORTHO05D007837 5.5e-168 594.3 313 86.9
FvH4_2g02550 Fragaria vesca HOM05D006483 ORTHO05D007837 7.2e-168 594.0 313 84.7
FAN15G2441 Fragaria x ananassa HOM05D006483 ORTHO05D007837 7.2e-168 594.0 313 85.0
Gohir.A12G031000 Gossypium hirsutum HOM05D006483 ORTHO05D007837 1.2e-167 593.2 315 86.3
Gorai.008G043200 Gossypium raimondii HOM05D006483 ORTHO05D007837 1.2e-167 593.2 315 86.3
Sabra16G0180000 Salix brachista HOM05D006483 ORTHO05D007837 1.2e-167 593.2 328 83.5
Manes.07G049300 Manihot esculenta HOM05D006483 ORTHO05D007837 1.0e-166 590.1 328 82.9
Prupe.8G157100 Prunus persica HOM05D006483 ORTHO05D007837 1.0e-166 590.1 313 85.3
Aqoxy6G02925 Aquilegia oxysepala HOM05D006483 ORTHO05D007837 2.3e-166 589.0 319 83.7
Dinv09500 Davidia involucrata HOM05D006483 ORTHO05D007837 2.3e-166 589.0 315 85.7
arahy.Tifrunner.gnm1.ann1.SKNB9F Arachis hypogaea HOM05D006483 ORTHO05D007837 3.0e-166 588.6 336 81.0
Duzib248G0339 Durio zibethinus HOM05D006483 ORTHO05D007837 3.0e-166 588.6 313 86.6
Duzib132G0719 Durio zibethinus HOM05D006483 ORTHO05D007837 4.0e-166 588.2 315 86.0
ClCG10G009710 Citrullus lanatus HOM05D006483 ORTHO05D007837 5.2e-166 587.8 317 84.2
Phvul.006G198100 Phaseolus vulgaris HOM05D006483 ORTHO05D007837 8.8e-166 587.0 316 84.2
RcHm_v2.0_Chr6g0246361 Rosa chinensis HOM05D006483 ORTHO05D007837 8.8e-166 587.0 313 84.7
GSVIVG01036968001 Vitis vinifera HOM05D006483 ORTHO05D007837 8.8e-166 587.0 316 83.9
Nn6g34537 Nelumbo nucifera HOM05D006483 ORTHO05D007837 1.2e-165 586.6 316 83.9
Potri.001G287700 Populus trichocarpa HOM05D006483 ORTHO05D007837 1.2e-165 586.6 328 83.2
CANSAT25G2975 Cannabis sativa HOM05D006483 ORTHO05D007837 1.5e-165 586.3 314 85.4
CsaV3_4G014600 Cucumis sativus L. HOM05D006483 ORTHO05D007837 2.0e-165 585.9 316 84.2
PGR142G2962 Punica granatum HOM05D006483 ORTHO05D007837 2.0e-165 585.9 325 82.5
Sc14g0002760 Simmondsia chinensis HOM05D006483 ORTHO05D007837 7.5e-165 583.9 313 84.3
CiPaw.05G024900 Carya illinoinensis HOM05D006483 ORTHO05D007837 9.8e-165 583.6 321 83.8
Atru.chr5.2145 Acer truncatum HOM05D006483 ORTHO05D007837 1.3e-164 583.2 316 83.9
VMungo0540G0518 Vigna mungo HOM05D006483 ORTHO05D007837 1.3e-164 583.2 324 81.5
Cpa.g.sc20.69 Carica papaya HOM05D006483 ORTHO05D007837 1.7e-164 582.8 313 83.7
Glyma.15G061600 Glycine max HOM05D006483 ORTHO05D007837 2.2e-164 582.4 316 82.9
Thecc.02G034600 Theobroma cacao HOM05D006483 ORTHO05D007837 3.7e-164 581.6 316 84.2
CiPaw.06G161800 Carya illinoinensis HOM05D006483 ORTHO05D007837 6.3e-164 580.9 324 81.5
Cc02_g20380 Coffea canephora HOM05D006483 ORTHO05D007837 8.3e-164 580.5 328 80.8
Lj1g0015418 Lotus japonicus HOM05D006483 ORTHO05D007837 8.3e-164 580.5 316 83.5
COL.COLO4_17833 Corchorus olitorius HOM05D006483 ORTHO05D007837 1.1e-163 580.1 338 80.2
ECA234G3552 Erigeron canadensis HOM05D006483 ORTHO05D007837 1.1e-163 580.1 313 83.4
Ciclev10030436m.g Citrus clementina HOM05D006483 ORTHO05D007837 1.8e-163 579.3 314 83.8
Psat1g212200 Pisum sativum HOM05D006483 ORTHO05D007837 2.4e-163 578.9 313 83.1
Cfa004758 Carpinus fangiana HOM05D006483 ORTHO05D007837 3.1e-163 578.6 328 81.1
FAN27G0654 Fragaria x ananassa HOM05D006483 ORTHO05D007837 3.1e-163 578.6 336 78.9
QL11p027690 Quercus lobata HOM05D006483 ORTHO05D007837 4.1e-163 578.2 324 81.2
Sed0015964 Sechium edule HOM05D006483 ORTHO05D007837 4.1e-163 578.2 316 83.5
TAR376G0523 Trochodendron aralioides HOM05D006483 ORTHO05D007837 4.1e-163 578.2 317 81.7
Eucgr.I02515 Eucalyptus grandis HOM05D006483 ORTHO05D007837 5.4e-163 577.8 326 82.5
Medtr2g010480 Medicago truncatula HOM05D006483 ORTHO05D007837 2.7e-162 575.5 311 84.2
Lalb_Chr15g0090221 Lupinus albus HOM05D006483 ORTHO05D007837 3.5e-162 575.1 325 79.4
Rhsim11G0146300 Rhododendron simsii HOM05D006483 ORTHO05D007837 7.7e-162 573.9 328 80.8
HanXRQChr10g0297661 Helianthus annuus HOM05D006483 ORTHO05D007837 1.3e-161 573.2 316 81.6
PSO541G5548 Papaver somniferum HOM05D006483 ORTHO05D007837 1.7e-161 572.8 317 81.4
Ca_00195_v3 Cicer arietinum L. HOM05D006483 ORTHO05D007837 2.3e-161 572.4 316 81.6
EL10Ac9g22152 Beta vulgaris HOM05D006483 ORTHO05D007837 2.9e-161 572.0 313 83.4
vmacro01915 Vaccinium macrocarpon HOM05D006483 ORTHO05D007837 3.8e-161 571.6 316 82.3
Lsat_1_v5_gn_5_110541 Lactuca sativa HOM05D006483 ORTHO05D007837 8.6e-161 570.5 316 81.3
Migut.B00501 Erythranthe guttata HOM05D006483 ORTHO05D007837 1.0e-158 563.5 323 78.6
PSO675G7999 Papaver somniferum HOM05D006483 ORTHO05D007837 4.0e-158 561.6 317 79.8
Solyc11g044310.2 Solanum lycopersicum HOM05D006483 ORTHO05D007837 4.0e-158 561.6 317 80.8
Sopen11g019810 Solanum pennellii HOM05D006483 ORTHO05D007837 5.2e-158 561.2 317 80.8
DCAR_029840 Daucus carota HOM05D006483 ORTHO05D007837 6.8e-158 560.8 317 79.8
SalBow6G1047 Salvia bowleyana HOM05D006483 ORTHO05D007837 5.7e-157 557.8 336 76.8
CAN.G475.27 Capsicum annuum HOM05D006483 ORTHO05D007837 9.8e-157 557.0 313 80.8
CSS0046506 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 3.7e-156 555.1 320 80.0
Peaxi162Scf00152g00613 Petunia axillaris HOM05D006483 ORTHO05D007837 2.0e-154 549.3 340 74.7
unitig_21.g20708 Utricularia gibba HOM05D006483 ORTHO05D007837 3.5e-154 548.5 317 78.9
Lj5C223T22 Lonicera japonica HOM05D006483 ORTHO05D007837 4.5e-154 548.1 320 79.4
ATR0739G015 Amborella trichopoda HOM05D006483 ORTHO05D007837 1.1e-152 543.5 313 78.6
SGA_v2.0_scaffold342G49421 Striga asiatica HOM05D006483 ORTHO05D007837 1.5e-152 543.1 334 74.6
TAR628G0755 Trochodendron aralioides HOM05D006483 ORTHO05D007837 5.8e-149 531.2 287 81.9
arahy.Tifrunner.gnm1.ann1.AKE21I Arachis hypogaea HOM05D006483 ORTHO05D007837 3.2e-147 525.4 324 75.9
MELO3C018038.2 Cucumis melo HOM05D006483 ORTHO05D007837 4.1e-147 525.0 350 72.6
CSS0033600 Camellia sinensis var. sinensis HOM05D006483 ORTHO05D007837 7.8e-146 520.8 320 77.2
MSTRG.16655 Avicennia marina HOM05D006483 ORTHO05D007837 5.0e-145 518.1 283 81.6
HPP92_006303 Vanilla planifolia HOM05D006483 ORTHO05D007837 1.1e-144 516.9 322 74.2
CDE02G1970 Ceratophyllum demersum HOM05D006483 ORTHO05D007837 1.6e-143 513.1 316 74.7
SMO145G0068 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 3.4e-141 505.4 315 70.8
Mapoly0001s0344 Marchantia polymorpha HOM05D006483 ORTHO05D007837 4.9e-140 501.5 313 72.5
Zm00001eb292750 Zea mays HOM05D006483 ORTHO05D007837 6.4e-140 501.1 285 80.7
Pp3c4_27270 Physcomitrium patens HOM05D006483 ORTHO05D007837 4.6e-138 495.0 313 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4362 Anthoceros agrestis HOM05D006483 ORTHO05D007837 1.3e-137 493.4 323 68.1
AUR62027055 Chenopodium quinoa HOM05D006483 ORTHO05D007837 3.3e-136 488.8 325 70.2
CBR_g8564 Chara braunii HOM05D006483 ORTHO05D007837 8.1e-127 457.6 318 66.0
Haze_10356 Corylus avellana HOM05D006483 ORTHO05D007837 1.3e-124 450.3 576 45.5
Os05g0513900 Oryza sativa ssp. japonica HOM05D006483 ORTHO05D007837 4.0e-118 428.7 246 80.1
Ah.01g024350 Amaranthus hybridus HOM05D006483 ORTHO05D007837 2.6e-101 372.9 263 70.0
AUR62030898 Chenopodium quinoa HOM05D006483 ORTHO05D007837 6.5e-100 368.2 279 63.8
Actinidia00335 Actinidia chinensis HOM05D006483 ORTHO05D007837 1.3e-95 354.0 224 76.3
Nitab4.5_0007517g0010 Nicotiana tabacum HOM05D006483 ORTHO05D007837 4.8e-95 352.1 190 83.2
Mapoly0142s0028 Marchantia polymorpha HOM05D006483 ORTHO05D007837 2.6e-93 346.3 360 46.4
SMO364G0301 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 2.6e-85 319.7 314 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1401 Anthoceros agrestis HOM05D006483 ORTHO05D007837 5.9e-85 318.5 348 44.8
SMO353G0285 Selaginella moellendorffii HOM05D006483 ORTHO05D007837 5.9e-85 318.5 315 48.6
MBI16_g27214_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 5.9e-69 265.4 163 75.5
PRCOL_00002897 Prasinoderma coloniale HOM05D006483 ORTHO05D007837 1.0e-57 228.0 344 39.8
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 1.5e-56 224.2 122 80.3
Zm00001eb142680 Zea mays HOM05D006483 ORTHO05D007837 4.8e-55 219.2 196 55.6
MBI16_g41225_MAGBIO Magnolia biondii HOM05D006483 ORTHO05D007837 1.1e-54 218.0 156 66.7
Cre08.g375600 Chlamydomonas reinhardtii HOM05D006483 ORTHO05D007837 1.6e-50 204.1 201 47.3
EL10Ac8g19599 Beta vulgaris HOM05D006483 ORTHO05D007837 1.8e-49 200.7 137 70.1
MD05G1112500 Malus domestica HOM05D006483 ORTHO05D007837 4.9e-47 192.6 205 52.7
Oeu007495.1 Olea europaea HOM05D006483 ORTHO05D007837 4.6e-29 132.9 79 72.2
MD05G1112400 Malus domestica HOM05D006483 ORTHO05D007837 6.0e-21 105.9 69 63.8
Pp3s30_380 Physcomitrium patens HOM05D000068 ORTHO05D020444 1.3e-12 78.2 279 26.2
Pp3s30_381 Physcomitrium patens HOM05D000068 ORTHO05D020444 1.3e-12 78.2 279 26.2
SEGI_05070 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 3.0e-12 77.0 80 48.8
arahy.Tifrunner.gnm1.ann1.W5BQ9H Arachis hypogaea HOM05D006483 ORTHO05D000252 4.3e-11 73.2 62 56.5
TPR.G27616 Trifolium pratense HOM05D006483 ORTHO05D007837 5.6e-11 72.8 39 71.8
Cfa023956 Carpinus fangiana HOM05D026080 ORTHO05D034125 2.4e-09 67.4 116 34.5
SEGI_04316 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 1.7e-07 61.2 34 76.5
Ciclev10016000m.g Citrus clementina HOM05D000363 ORTHO05D000236 2.2e-07 60.8 155 25.8
PSO339G5342 Papaver somniferum HOM05D000363 ORTHO05D000236 4.9e-07 59.7 101 33.7
FAN16G1656 Fragaria x ananassa HOM05D000363 ORTHO05D000236 6.4e-07 59.3 126 27.8
VMungo0251G1525 Vigna mungo HOM05D000363 ORTHO05D000236 6.4e-07 59.3 121 28.9
Zm00001eb049690 Zea mays HOM05D003600 ORTHO05D004129 6.4e-07 59.3 44 56.8
RcHm_v2.0_Chr5g0007821 Rosa chinensis HOM05D000363 ORTHO05D000236 1.1e-06 58.5 100 31.0
Aqoxy4G01160 Aquilegia oxysepala HOM05D000363 ORTHO05D000236 2.4e-06 57.4 99 30.3
FAN23G1950 Fragaria x ananassa HOM05D000363 ORTHO05D000236 3.2e-06 57.0 126 27.8
FAN26G0454 Fragaria x ananassa HOM05D000363 ORTHO05D000236 3.2e-06 57.0 126 27.8
HPP92_001752 Vanilla planifolia HOM05D000363 ORTHO05D000236 3.2e-06 57.0 109 33.0
AUR62008686 Chenopodium quinoa HOM05D000363 ORTHO05D000236 4.2e-06 56.6 125 27.2
FAN21G0435 Fragaria x ananassa HOM05D000363 ORTHO05D000236 4.2e-06 56.6 124 30.6
RcHm_v2.0_Chr5g0007841 Rosa chinensis HOM05D000363 ORTHO05D000236 4.2e-06 56.6 122 29.5
Cpa.g.sc1028.5 Carica papaya HOM05D000363 ORTHO05D000236 5.4e-06 56.2 101 27.7
Glyma.13G182100 Glycine max HOM05D000363 ORTHO05D000236 5.4e-06 56.2 103 32.0
FvH4_3g04781 Fragaria vesca HOM05D000363 ORTHO05D000236 9.3e-06 55.5 100 31.0
FAN19G0844 Fragaria x ananassa HOM05D000363 ORTHO05D000236 9.3e-06 55.5 100 32.0
FAN25G3617 Fragaria x ananassa HOM05D000363 ORTHO05D000236 9.3e-06 55.5 100 31.0
FAN26G2646 Fragaria x ananassa HOM05D000363 ORTHO05D000236 9.3e-06 55.5 126 27.0
PSO384G1479 Papaver somniferum HOM05D000363 ORTHO05D000236 9.3e-06 55.5 101 31.7


User provided reference genes

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