Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 6.7e-81 303.9 149 100.0
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 2.8e-71 271.9 134 98.5
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.2e-69 266.5 134 94.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 2.7e-69 265.4 134 94.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 3.8e-68 261.5 134 94.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 5.0e-68 261.2 134 93.3
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 3.2e-67 258.5 134 91.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 9.5e-67 256.9 134 90.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 9.5e-67 256.9 134 90.3
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.2e-66 256.5 134 90.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.1e-66 254.2 134 88.1
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.0e-66 253.8 134 88.8
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.0e-66 253.8 134 88.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.8e-65 250.8 134 86.6
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.3e-63 244.2 134 82.8
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 7.0e-62 240.7 134 80.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 7.8e-61 237.3 134 81.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 7.8e-61 237.3 134 79.1
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.0e-60 236.9 134 82.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.0e-60 236.9 134 79.9
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-60 235.3 134 82.1
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.9e-60 235.3 134 79.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 5.0e-60 234.6 134 81.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.0e-60 234.6 134 82.1
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 8.6e-60 233.8 134 80.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-59 233.4 134 79.9
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.9e-59 232.6 134 81.3
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.5e-59 232.3 134 79.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.3e-59 231.9 134 78.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 4.3e-59 231.5 134 79.1
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.3e-59 231.5 134 79.1
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 5.6e-59 231.1 134 79.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 7.3e-59 230.7 134 78.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.3e-59 230.7 134 76.9
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 7.3e-59 230.7 134 77.6
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 9.5e-59 230.3 136 78.7
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 9.5e-59 230.3 136 76.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.6e-58 229.6 134 78.4
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.6e-58 229.6 134 78.4
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.6e-58 229.6 134 79.1
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.6e-58 229.6 134 78.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 2.8e-58 228.8 134 78.4
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.8e-58 228.8 134 77.6
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.6e-58 228.4 134 78.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 6.1e-58 227.6 134 77.6
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 6.1e-58 227.6 134 76.9
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 8.0e-58 227.3 134 76.1
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-57 226.9 134 76.9
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.0e-57 226.9 134 77.6
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 1.4e-57 226.5 134 77.6
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-57 226.5 134 79.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.4e-57 226.5 134 77.6
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.2e-57 224.6 134 76.9
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.2e-57 224.6 134 76.9
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 8.9e-57 223.8 134 75.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 8.9e-57 223.8 134 76.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.2e-56 223.4 134 77.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.0e-56 222.6 136 74.3
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.6e-56 222.2 132 76.5
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 3.4e-56 221.9 129 79.1
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 3.4e-56 221.9 132 76.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 4.4e-56 221.5 134 76.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.7e-56 221.1 134 73.9
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.7e-56 221.1 134 76.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 7.5e-56 220.7 134 76.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 7.5e-56 220.7 134 76.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 9.8e-56 220.3 134 76.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.2e-55 219.2 134 75.4
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 2.2e-55 219.2 134 74.6
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 2.9e-55 218.8 134 74.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.9e-55 218.8 131 75.6
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.9e-55 218.8 134 74.6
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 3.7e-55 218.4 136 75.7
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 4.9e-55 218.0 132 75.0
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 6.4e-55 217.6 133 78.2
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.4e-55 217.6 134 75.4
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.4e-55 217.6 134 74.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 1.1e-54 216.9 131 75.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.8e-54 216.1 134 72.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.4e-54 215.7 133 74.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 2.4e-54 215.7 134 71.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.4e-54 214.5 131 75.6
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.0e-54 214.2 134 73.9
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 7.0e-54 214.2 134 75.4
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 9.2e-54 213.8 134 71.6
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-53 213.0 131 74.0
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.6e-53 213.0 134 71.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.0e-53 212.6 132 75.0
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 4.6e-53 211.5 131 73.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.8e-53 210.7 131 74.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.0e-52 210.3 134 71.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-52 209.9 131 72.5
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 1.7e-52 209.5 134 69.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 3.0e-52 208.8 121 78.5
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 3.0e-52 208.8 133 72.2
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.0e-52 208.0 131 72.5
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.0e-52 208.0 133 71.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-51 206.5 134 73.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.9e-51 206.1 134 71.6
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.5e-51 205.7 133 69.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 7.3e-51 204.1 134 70.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 7.3e-51 204.1 132 71.2
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 9.5e-51 203.8 132 72.7
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.2e-50 203.4 133 69.2
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.6e-50 203.0 135 69.6
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.1e-50 202.6 130 70.8
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.8e-50 202.2 133 71.4
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-50 201.8 136 69.9
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.6e-50 201.8 136 69.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 3.6e-50 201.8 131 72.5
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.2e-50 201.1 132 69.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 8.0e-50 200.7 134 70.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.1e-49 200.3 132 69.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.4e-49 199.9 132 67.4
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.3e-49 199.1 131 67.2
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 4.0e-49 198.4 134 68.7
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.0e-49 198.4 131 71.8
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.8e-48 194.5 132 66.7
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.5e-48 194.1 131 71.0
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.8e-48 193.7 132 67.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 9.8e-48 193.7 132 67.4
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 9.8e-48 193.7 128 66.4
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 9.8e-48 193.7 131 66.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.8e-48 193.7 132 68.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-47 193.0 131 64.1
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.9e-47 191.4 134 68.7
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.1e-46 190.3 132 65.2
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-46 190.3 132 66.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 1.4e-46 189.9 132 63.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.4e-46 189.1 132 66.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 4.1e-46 188.3 134 62.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 5.4e-46 188.0 133 63.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 7.0e-46 187.6 134 63.4
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.6e-45 186.4 131 63.4
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.9e-44 181.8 131 63.4
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.6e-44 180.6 139 64.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.3e-43 178.3 132 62.1
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 5.6e-43 177.9 133 65.4
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.6e-43 177.9 133 65.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-42 176.8 131 64.1
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.1e-42 176.0 133 64.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.8e-42 175.6 133 64.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.1e-42 174.1 128 60.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 3.4e-40 168.7 132 58.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 7.5e-40 167.5 134 61.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 6.4e-39 164.5 134 59.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 4.1e-38 161.8 129 63.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.2e-37 160.2 129 62.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.5e-37 158.7 94 77.7
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-36 156.8 100 72.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.3e-36 156.0 113 71.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 8.6e-36 154.1 94 72.3
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.9e-35 152.9 100 77.0
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.5e-35 152.5 111 59.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-34 150.2 95 74.7
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.8e-34 149.1 94 72.3
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 2.8e-34 149.1 124 58.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.8e-34 149.1 92 76.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 8.1e-34 147.5 92 75.0
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.1e-33 147.1 94 71.3
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 3.1e-33 145.6 90 75.6
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 8.9e-33 144.1 96 67.7
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.8e-32 141.4 90 72.2
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 5.4e-30 134.8 91 67.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.6e-29 133.3 97 63.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.6e-29 133.3 94 64.9
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.7e-28 129.8 89 69.7
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 5.8e-24 114.8 128 40.6
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.8e-23 112.1 69 73.9
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.3e-19 97.8 79 59.5
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 6.0e-13 78.2 45 68.9
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 7.9e-13 77.8 131 36.6
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 4.3e-11 72.0 69 55.1
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.8e-09 66.6 36 77.8
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 6.9e-09 64.7 36 77.8
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.3e-07 60.5 44 65.9
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 3.2e-06 55.8 30 76.7
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-06 55.1 36 63.9


User provided reference genes

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