Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.2e-235 818.5 402 100.0
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 1.2e-233 812.8 402 99.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 8.6e-232 806.6 402 97.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.8e-230 801.6 402 97.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 9.9e-228 793.1 402 95.8
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 9.9e-228 793.1 402 95.8
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 9.9e-228 793.1 402 95.8
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 1.3e-227 792.7 402 95.5
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 1.3e-227 792.7 402 95.5
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.3e-227 792.7 402 96.0
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 96.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 96.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 96.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 4.9e-227 790.8 402 96.0
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 4.9e-227 790.8 402 96.0
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 95.5
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 95.3
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 7.1e-226 786.9 402 95.0
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.0e-216 755.0 402 90.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.3e-214 749.6 402 90.0
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 88.8
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.1
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.8e-213 745.7 402 89.1
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 88.6
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.1
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 88.1
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 88.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.5e-212 742.7 402 87.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 87.6
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.1
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.6
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 87.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 87.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.6
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.3e-211 739.6 402 88.1
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 87.1
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 87.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 1.7e-211 739.2 401 87.5
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 87.8
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 87.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 2.2e-211 738.8 402 87.1
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.8
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 86.1
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 87.6
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 87.1
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 87.8
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 86.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 87.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 86.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 86.8
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 85.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 86.3
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 86.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 86.1
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 5.5e-210 734.2 402 87.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 86.8
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.1
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.6
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 85.6
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.1
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.1
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.1
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.3
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 2.7e-209 731.9 411 86.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.3
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 87.6
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 3.5e-209 731.5 402 86.1
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 86.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 86.6
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 86.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.3e-208 728.8 402 86.6
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 5.1e-208 727.6 417 84.4
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 86.1
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.1
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.3
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.8
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.8
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 85.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 86.1
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 9.6e-207 723.4 402 85.3
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 87.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 2.1e-206 722.2 402 84.6
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 85.6
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 3.7e-206 721.5 429 82.8
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 6.2e-206 720.7 402 85.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.2e-206 720.7 438 80.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.1e-205 719.9 402 86.3
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 84.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 85.6
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 85.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 84.8
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 85.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 9.0e-205 716.8 396 86.4
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.5e-204 716.1 402 85.1
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.0e-204 715.7 402 84.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.4e-204 714.9 402 83.6
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 3.4e-204 714.9 402 83.3
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 84.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 4.5e-204 714.5 416 83.4
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.0e-203 713.4 402 84.8
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.3e-203 713.0 416 83.2
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 2.2e-203 712.2 402 85.1
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.1e-202 709.9 402 84.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.4e-202 709.5 401 84.5
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 85.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.0e-201 704.1 402 84.6
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.8e-200 702.6 402 84.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 81.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 1.5e-199 699.5 402 83.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.5e-199 698.7 419 82.3
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 7.4e-199 697.2 402 82.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 4.8e-198 694.5 400 82.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 1.3e-195 686.4 402 80.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 2.2e-195 685.6 441 76.4
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 5.1e-192 674.5 402 81.8
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.3e-190 669.8 402 79.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 78.4
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 3.1e-189 665.2 375 83.7
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.1
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.2e-187 659.1 357 87.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 5.0e-187 657.9 402 78.4
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 4.2e-186 654.8 402 79.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.3e-183 645.2 360 85.3
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 4.8e-182 641.3 361 85.0
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 7.9e-177 624.0 402 75.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.0e-176 622.1 401 72.8
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 9.7e-175 617.1 402 72.6
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.8e-174 615.5 340 86.5
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.0e-172 609.4 402 71.1
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.0e-171 607.1 334 87.1
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.9e-170 602.8 402 70.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.2e-170 600.9 403 70.5
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.6e-169 599.7 403 71.0
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 2.3e-168 595.9 402 73.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 9.4e-162 573.9 401 67.1
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.8e-158 562.4 402 66.7
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 8.3e-158 560.8 403 65.3
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 2.9e-147 525.8 289 85.1
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 4.0e-144 515.4 403 68.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 1.6e-140 503.4 419 63.2
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 6.8e-136 488.0 402 63.7
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 2.7e-124 449.5 259 81.5
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 8.6e-123 444.5 394 55.3
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 7.3e-114 414.8 276 76.1
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.1e-112 411.0 384 53.6
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.0e-104 382.5 229 79.9
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 3.3e-98 362.8 219 79.5
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.8e-97 359.8 219 78.1
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 6.2e-97 358.6 219 77.2
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-79 301.2 300 51.7
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.7e-78 297.4 163 87.7
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.7e-75 285.0 160 84.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.2e-54 217.2 116 89.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.5e-31 139.8 353 28.9
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 7.8e-31 139.0 351 26.8
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 1.0e-30 138.7 86 76.7
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 9.8e-18 95.5 47 93.6
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.4e-16 89.7 45 86.7
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.4e-11 75.1 72 55.6
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 5.2e-11 73.2 316 22.5


User provided reference genes

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