Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G07820 Arabidopsis thaliana HOM05D008283 ORTHO05D009928 1.2e-45 186.0 89 100.0
BcaC05g26890 Brassica carinata HOM05D008283 ORTHO05D009928 2.2e-23 112.1 86 65.1
BolSC28t60335H Brassica oleracea HOM05D008283 ORTHO05D009928 2.2e-23 112.1 86 65.1
BolSC28t60401H Brassica oleracea HOM05D008283 ORTHO05D009928 2.2e-23 112.1 86 65.1
BraSC77t46668Z Brassica rapa HOM05D008283 ORTHO05D009928 2.2e-23 112.1 86 65.1
BraSC48t46259Z Brassica rapa HOM05D008283 ORTHO05D009928 6.5e-23 110.5 86 64.0
HanXRQChr03g0069121 Helianthus annuus HOM05D008283 ORTHO05D009928 1.3e-18 96.3 73 65.8
HanXRQChr15g0485981 Helianthus annuus HOM05D008283 ORTHO05D009928 1.7e-18 95.9 73 65.8
HanXRQChr04g0098351 Helianthus annuus HOM05D008283 ORTHO05D009928 2.8e-18 95.1 73 65.8
HanXRQChr17g0561471 Helianthus annuus HOM05D008283 ORTHO05D009928 2.8e-18 95.1 73 65.8
HanXRQMTg0579231 Helianthus annuus HOM05D008283 ORTHO05D009928 1.1e-17 93.2 73 64.4
HanXRQMTg0579701 Helianthus annuus HOM05D008283 ORTHO05D009928 1.1e-17 93.2 73 64.4
Hma1.2p1_0904F.1_g235230 Hydrangea macrophylla HOM05D008283 ORTHO05D009928 3.1e-17 91.7 60 71.7
Lalb_Chr00c29g0407761 Lupinus albus HOM05D008283 ORTHO05D009928 1.3e-15 86.3 73 57.5
Lalb_Chr00c29g0408321 Lupinus albus HOM05D008283 ORTHO05D009928 1.3e-15 86.3 73 57.5
Medtr1g041535 Medicago truncatula HOM05D008283 ORTHO05D009928 6.6e-15 84.0 68 61.8
EL10As7g23793 Beta vulgaris HOM05D004909 ORTHO05D009928 8.6e-15 83.6 80 52.5
PGR028G0007 Punica granatum HOM05D008283 ORTHO05D009928 1.2e-13 79.7 79 49.4
BraSC159t45721Z Brassica rapa HOM05D008283 ORTHO05D009928 6.1e-13 77.4 49 71.4
Nitab4.5_0002418g0110 Nicotiana tabacum HOM05D008283 ORTHO05D009928 8.0e-13 77.0 86 47.7
RcHm_v2.0_MTg0498941 Rosa chinensis HOM05D008283 ORTHO05D009928 1.4e-12 76.3 73 53.4
Nn1g10067 Nelumbo nucifera HOM05D008283 ORTHO05D009928 1.8e-12 75.9 86 48.8
Nitab4.5_0001788g0210 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.2e-11 73.2 86 45.3
unitig_87.g27963 Utricularia gibba HOM05D008283 ORTHO05D009928 1.5e-11 72.8 66 56.1
Nitab4.5_0004681g0020 Nicotiana tabacum HOM05D008283 ORTHO05D009928 3.4e-11 71.6 86 46.5
RcHm_v2.0_Chr3g0453191 Rosa chinensis HOM05D008283 ORTHO05D009928 3.4e-11 71.6 73 50.7
Nitab4.5_0000664g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 1.3e-10 69.7 71 50.7
AUR62031778 Chenopodium quinoa HOM05D008283 ORTHO05D009928 3.7e-10 68.2 79 45.6
Thhalv10001273m.g Eutrema salsugineum HOM05D008283 ORTHO05D009928 6.3e-10 67.4 76 50.0
Nitab4.5_0000362g0080 Nicotiana tabacum HOM05D008283 ORTHO05D009928 6.3e-10 67.4 68 51.5
arahy.Tifrunner.gnm1.ann1.31RDDR Arachis hypogaea HOM05D008283 ORTHO05D009928 1.8e-09 65.9 79 40.5
arahy.Tifrunner.gnm1.ann1.UF4NHZ Arachis hypogaea HOM05D008283 ORTHO05D009928 1.8e-09 65.9 79 40.5
arahy.Tifrunner.gnm1.ann1.X4VFKB Arachis hypogaea HOM05D008283 ORTHO05D009928 1.8e-09 65.9 79 40.5
CARHR259830 Cardamine hirsuta HOM05D008283 ORTHO05D009928 2.4e-09 65.5 80 46.2
Lj5g0014228 Lotus japonicus HOM05D008283 ORTHO05D009928 4.1e-09 64.7 68 48.5
LjContig00439g0010892 Lotus japonicus HOM05D008283 ORTHO05D009928 4.1e-09 64.7 68 48.5
Ah.10g028250 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.2e-09 63.5 79 43.0
Ah.10g028800 Amaranthus hybridus HOM05D008283 ORTHO05D009928 9.2e-09 63.5 79 43.0
AUR62042329 Chenopodium quinoa HOM05D008283 ORTHO05D009928 9.2e-09 63.5 79 43.0
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.2e-08 63.2 68 48.5
Ca_17166_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 1.0e-07 60.1 67 44.8
Ca_30751_v3 Cicer arietinum L. HOM05D008283 ORTHO05D009928 1.0e-07 60.1 67 44.8
Potri.007G061701 Populus trichocarpa HOM05D008283 ORTHO05D009928 1.3e-07 59.7 43 62.8
SabraMtG0004000 Salix brachista HOM05D008283 ORTHO05D009928 1.3e-07 59.7 43 62.8
TPR.G935 Trifolium pratense HOM05D008283 ORTHO05D009928 1.3e-07 59.7 78 39.7
Nitab4.5_0000280g0170 Nicotiana tabacum HOM05D008283 ORTHO05D009928 2.3e-07 58.9 86 39.5
FvH4_6g04760 Fragaria vesca HOM05D000160 ORTHO05D000914 3.9e-07 58.2 73 41.1
FAN09G0853 Fragaria x ananassa HOM05D000160 ORTHO05D000914 3.9e-07 58.2 73 41.1
FAN14G2913 Fragaria x ananassa HOM05D008283 ORTHO05D009928 3.9e-07 58.2 73 41.1
FAN02G3211 Fragaria x ananassa HOM05D000160 ORTHO05D000914 5.0e-07 57.8 73 39.7
AUR62002477 Chenopodium quinoa HOM05D008283 ORTHO05D009928 1.9e-06 55.8 79 39.2
Gohir.A11G200616 Gossypium hirsutum HOM05D008283 ORTHO05D009928 1.9e-06 55.8 61 41.0
FAN17G2731 Fragaria x ananassa HOM05D008283 ORTHO05D009928 3.3e-06 55.1 78 38.5
Peaxi162Scf01132g00318 Petunia axillaris HOM05D017454 ORTHO05D009928 4.3e-06 54.7 73 41.1
Nitab4.5_0001121g0220 Nicotiana tabacum HOM05D008283 ORTHO05D009928 9.5e-06 53.5 65 44.6
Nitab4.5_0010736g0020 Nicotiana tabacum HOM05D017454 ORTHO05D009928 9.5e-06 53.5 73 41.1
SHI50327 Sapria himalayana HOM05D008283 ORTHO05D364832 9.5e-06 53.5 38 57.9


User provided reference genes

Program Settings