Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.1e-136 491.1 537 100.0
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 2.9e-126 456.4 537 96.1
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 3.4e-114 416.4 216 91.7
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 4.3e-109 399.4 219 88.6
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 6.1e-108 395.6 312 86.2
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.4e-104 384.4 218 87.2
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.7e-102 377.5 213 85.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 1.6e-100 370.9 213 84.0
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 1.6e-100 370.9 213 84.0
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 5.2e-99 365.9 213 83.1
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 6.8e-99 365.5 211 82.9
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 3.4e-98 363.2 212 83.0
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 2.6e-90 337.0 217 76.5
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.3e-89 334.7 211 75.8
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 9.2e-80 302.0 212 70.3
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 3.9e-46 190.3 216 49.1
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.1e-43 180.6 210 48.6
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 6.9e-43 179.5 210 49.0
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 5.9e-42 176.4 212 46.7
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.7e-41 174.9 199 50.3
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.2e-41 174.5 210 47.6
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 5.0e-41 173.3 218 45.4
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 8.5e-41 172.6 199 47.7
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 8.5e-41 172.6 204 46.6
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 8.5e-41 172.6 209 47.8
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 5.5e-40 169.9 183 49.2
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 7.2e-40 169.5 191 48.2
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.2e-39 168.7 204 49.5
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 1.2e-39 168.7 204 49.5
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.1e-39 167.9 218 42.7
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 2.1e-39 167.9 203 45.8
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 7.9e-39 166.0 187 47.1
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 2.3e-38 164.5 202 47.0
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 2.3e-38 164.5 203 46.8
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 2.3e-38 164.5 214 41.6
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.0e-38 164.1 202 47.0
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.6e-36 158.3 187 46.0
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-35 155.6 228 43.9
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.0e-34 151.4 189 49.2
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.0e-34 151.4 189 49.2
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 2.0e-34 151.4 205 43.4
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 3.4e-34 150.6 185 45.4
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 7.7e-34 149.4 220 42.3
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 1.0e-33 149.1 184 43.5
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 2.2e-33 147.9 206 42.7
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 2.2e-33 147.9 210 41.0
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.9e-33 147.5 205 41.0
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.0e-33 146.7 180 45.6
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 6.5e-33 146.4 182 47.3
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 1.1e-32 145.6 143 53.1
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.1e-32 145.6 217 41.0
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.1e-32 145.6 217 41.5
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.1e-32 145.6 187 46.5
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 1.1e-32 145.6 224 39.7
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 1.9e-32 144.8 140 55.7
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.9e-32 144.8 186 44.1
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.2e-32 144.1 189 44.4
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 4.2e-32 143.7 191 43.5
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 4.2e-32 143.7 140 55.0
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 9.4e-32 142.5 221 40.3
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.2e-31 142.1 212 41.5
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.2e-31 142.1 200 43.5
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 1.6e-31 141.7 205 40.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.7e-31 141.0 193 47.7
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 2.7e-31 141.0 138 53.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 2.7e-31 141.0 188 44.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 3.6e-31 140.6 187 44.4
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 4.6e-31 140.2 182 45.6
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 7.9e-31 139.4 223 38.1
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 1.4e-30 138.7 216 38.9
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.8e-30 138.3 188 42.6
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 3.9e-30 137.1 189 43.9
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 1.1e-29 135.6 231 37.7
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 2.0e-29 134.8 183 42.1
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 5.7e-29 133.3 194 40.7
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 7.4e-29 132.9 140 49.3
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 1.3e-28 132.1 186 41.9
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.3e-28 132.1 187 41.2
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 3.7e-28 130.6 183 41.0
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 6.3e-28 129.8 137 50.4
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.3e-28 129.8 211 39.8
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 1.1e-27 129.0 191 39.8
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 2.4e-27 127.9 192 41.1
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 4.1e-27 127.1 144 49.3
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.1e-27 127.1 226 37.2
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 5.3e-27 126.7 133 48.9
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 9.1e-27 125.9 137 48.2
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 2.6e-26 124.4 185 41.6
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.6e-26 124.4 145 47.6
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.4e-26 124.0 226 36.7
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 4.5e-26 123.6 212 35.8
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 5.9e-26 123.2 224 36.6
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 7.7e-26 122.9 135 47.4
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 6.5e-25 119.8 135 46.7
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 8.5e-25 119.4 199 38.2
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 8.5e-25 119.4 154 42.9
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 2.1e-23 114.8 149 40.9
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 2.7e-23 114.4 181 39.2
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 3.6e-23 114.0 179 35.2
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 6.1e-23 113.2 185 38.4
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 1.4e-22 112.1 194 38.7
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 1.8e-22 111.7 194 37.6
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 2.3e-22 111.3 194 38.7
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 6.7e-22 109.8 140 45.7
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 2.0e-21 108.2 92 57.6
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 2.0e-21 108.2 167 36.5
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.6e-21 107.8 133 41.4
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.7e-20 104.0 195 36.9
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 3.1e-19 100.9 195 36.4
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.1e-19 100.5 233 31.8
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.1e-19 100.5 233 31.8
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 3.5e-18 97.4 112 45.5
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 1.0e-17 95.9 182 37.4
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 3.2e-16 90.9 124 41.1
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 4.2e-16 90.5 161 36.6
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.0e-13 81.6 103 45.6
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 8.5e-09 66.2 155 27.1
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 1.1e-08 65.9 167 31.1
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.5e-08 65.5 155 27.7
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 2.5e-08 64.7 155 25.8
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.2e-07 62.4 110 39.1
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.7e-07 60.5 156 24.4
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 8.0e-07 59.7 155 25.2
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 1.0e-06 59.3 142 30.3
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 1.8e-06 58.5 155 23.9
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 2.3e-06 58.2 155 24.5
Peaxi162Scf00247g00063 Petunia axillaris HOM05D000424 ORTHO05D000355 2.3e-06 58.2 151 27.2
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 2.3e-06 58.2 155 23.9
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 3.0e-06 57.8 151 23.8
EL10Ac2g02881 Beta vulgaris HOM05D005973 ORTHO05D007285 3.0e-06 57.8 155 25.2
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 3.0e-06 57.8 155 24.5
Lalb_Chr25g0282721 Lupinus albus HOM05D005973 ORTHO05D007285 3.0e-06 57.8 144 26.4
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 4.0e-06 57.4 151 24.5
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 5.2e-06 57.0 155 25.2
Eucgr.C02463 Eucalyptus grandis HOM05D005973 ORTHO05D007285 5.2e-06 57.0 153 24.8
Hma1.2p1_1572F.1_g291500 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 5.2e-06 57.0 170 27.1
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 5.2e-06 57.0 151 25.2
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 6.8e-06 56.6 146 28.1
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.8
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.2
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.2
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 6.8e-06 56.6 151 25.8
AUR62037245 Chenopodium quinoa HOM05D005973 ORTHO05D007285 8.8e-06 56.2 155 24.5
Gohir.D10G064600 Gossypium hirsutum HOM05D006819 ORTHO05D008763 8.8e-06 56.2 138 29.0
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 8.8e-06 56.2 156 23.1
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 8.8e-06 56.2 151 25.8
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 8.8e-06 56.2 151 25.8


User provided reference genes

Program Settings