Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 3.6e-197 691.4 359 100.0
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.3e-95 353.2 330 58.2
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 2.1e-83 313.5 330 52.7
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 2.8e-80 303.1 301 54.8
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.7e-72 275.8 336 48.5
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 3.0e-66 256.5 217 61.3
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 8.7e-66 255.0 292 46.9
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 1.2e-62 244.6 303 46.2
C09p17160 Brassica napus HOM05D002195 ORTHO05D002898 2.2e-61 240.4 225 56.0
BolC9t54614H Brassica oleracea HOM05D002195 ORTHO05D002898 2.2e-61 240.4 225 56.0
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 1.2e-59 234.6 302 45.4
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 3.8e-53 213.0 302 43.0
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 1.9e-52 210.7 310 40.6
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 3.3e-41 173.3 316 38.9
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 2.1e-40 170.6 312 38.8
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 2.4e-39 167.2 314 38.2
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 5.3e-39 166.0 162 58.0
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 5.3e-39 166.0 162 58.0
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 1.2e-38 164.9 306 35.0
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 5.8e-38 162.5 162 56.8
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 5.8e-38 162.5 302 35.1
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 4.2e-36 156.4 200 45.5
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 5.5e-36 156.0 255 35.7
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 9.3e-36 155.2 342 32.2
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 4.6e-35 152.9 308 34.1
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 4.8e-32 142.9 166 45.8
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 6.3e-32 142.5 311 31.5
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 1.1e-31 141.7 157 47.1
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 1.1e-31 141.7 157 47.1
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.8e-31 141.0 313 32.9
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 2.2e-29 134.0 153 52.9
Thhalv10029417m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 2.9e-29 133.7 252 34.9
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 4.2e-28 129.8 304 32.2
AL7G47620 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 7.2e-28 129.0 161 45.3
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 5.1e-26 122.9 138 52.9
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.1e-25 121.7 160 43.1
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 2.5e-25 120.6 157 43.9
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.3e-25 119.8 135 52.6
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.4e-23 114.0 153 43.1
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.1e-17 95.1 175 36.6
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 2.0e-17 94.4 171 36.3
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 2.6e-17 94.0 149 38.9
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 5.7e-17 92.8 157 39.5
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 1.7e-16 91.3 214 30.8
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 8.2e-16 89.0 223 28.7
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 8.2e-16 89.0 149 31.5
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 1.4e-15 88.2 115 47.8
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.1e-15 87.0 160 36.9
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 7.0e-15 85.9 154 34.4
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 2.0e-14 84.3 272 25.0
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 2.0e-14 84.3 272 25.0
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 2.6e-14 84.0 132 39.4
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 1.0e-13 82.0 128 38.3
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 2.2e-13 80.9 183 29.0
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.9e-13 80.5 149 36.2
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 3.8e-13 80.1 165 32.7
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 8.5e-13 79.0 190 28.4
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 8.5e-13 79.0 190 28.4
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 1.1e-12 78.6 159 32.1
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.5e-12 77.4 156 33.3
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 2.5e-12 77.4 162 32.1
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.5e-12 77.4 219 26.0
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 3.2e-12 77.0 201 29.9
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.5e-12 76.3 155 33.5
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 7.2e-12 75.9 157 29.3
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.2e-12 75.9 150 33.3
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 9.4e-12 75.5 161 32.3
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 9.4e-12 75.5 154 33.8
BcaB06g27653 Brassica carinata HOM05D003814 ORTHO05D004399 1.6e-11 74.7 259 25.9
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.1e-11 74.3 153 31.4
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.1e-11 74.3 153 31.4
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.1e-11 74.3 153 31.4
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.1e-11 74.3 153 31.4
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 3.6e-11 73.6 140 34.3
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 8.0e-11 72.4 138 34.1
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 8.0e-11 72.4 155 36.8
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 8.0e-11 72.4 155 36.8
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.0e-10 72.0 154 34.4
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.4e-10 71.6 161 32.9
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 1.8e-10 71.2 160 31.9
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.8e-10 71.2 161 32.9
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.3e-10 70.9 154 33.1
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 6.7e-10 69.3 134 32.8
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.7e-10 69.3 160 30.6
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 8.8e-10 68.9 160 30.6
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 2.0e-09 67.8 147 28.6
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 3.3e-09 67.0 154 29.2
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.3e-09 67.0 85 40.0
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.7e-09 66.2 166 27.7
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 5.7e-09 66.2 152 28.3
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.7e-09 65.5 156 28.2
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 1.3e-08 65.1 201 27.4
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 1.3e-08 65.1 168 27.4
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 3.7e-08 63.5 169 27.2
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.7e-08 63.5 154 32.5
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.8e-08 63.2 162 27.8
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.8e-08 63.2 156 27.6
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 4.8e-08 63.2 166 27.1
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 6.3e-08 62.8 154 31.2
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.1e-07 62.0 126 34.1
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.4e-07 61.6 156 27.6
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 2.4e-07 60.8 131 29.8
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 3.1e-07 60.5 155 29.7
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 3.1e-07 60.5 138 30.4
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 3.1e-07 60.5 144 29.2
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 5.3e-07 59.7 158 29.7
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 5.3e-07 59.7 164 29.3
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 5.3e-07 59.7 167 28.1
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.1e-07 58.9 132 28.8
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 1.6e-06 58.2 153 30.7
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 3.5e-06 57.0 154 27.3
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 3.5e-06 57.0 157 27.4
CANSAT01G0893 Cannabis sativa HOM05D002420 ORTHO05D002422 4.5e-06 56.6 135 28.9
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 5.9e-06 56.2 128 29.7
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 5.9e-06 56.2 108 34.3


User provided reference genes

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