Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 8.7e-69 263.5 129 100.0
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 9.7e-68 260.0 129 98.4
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.1e-66 256.5 129 96.1
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.1e-66 256.5 129 96.1
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.4e-66 256.1 129 96.1
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.4e-66 256.1 129 96.1
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.8e-66 255.8 129 96.1
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 4.1e-66 254.6 129 95.3
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 4.1e-66 254.6 129 95.3
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 5.3e-66 254.2 129 95.3
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 4.5e-65 251.1 129 93.8
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 5.5e-63 244.2 129 89.9
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 4.8e-59 231.1 118 92.4
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 4.4e-52 208.0 127 79.5
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 5.7e-52 207.6 158 67.7
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 2.8e-51 205.3 112 85.7
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 2.8e-51 205.3 112 85.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 3.7e-51 204.9 112 85.7
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 3.7e-51 204.9 112 83.9
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 1.1e-50 203.4 112 84.8
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.4e-50 203.0 112 83.9
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.4e-50 203.0 111 84.7
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 3.1e-50 201.8 112 84.8
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 3.1e-50 201.8 127 77.2
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 3.1e-50 201.8 112 85.7
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 4.1e-50 201.4 112 83.9
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 4.1e-50 201.4 110 85.5
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 5.3e-50 201.1 112 83.9
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 5.3e-50 201.1 112 81.2
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 7.0e-50 200.7 112 82.1
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 7.0e-50 200.7 112 83.0
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 1.2e-49 199.9 112 82.1
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 1.2e-49 199.9 112 82.1
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.0e-49 199.1 125 76.0
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 82.1
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 81.2
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 2.0e-49 199.1 112 83.0
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 2.6e-49 198.7 112 83.0
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 2.6e-49 198.7 112 83.0
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.5e-49 198.4 123 78.0
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 3.5e-49 198.4 112 81.2
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 4.5e-49 198.0 115 80.9
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 4.5e-49 198.0 112 82.1
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 7.7e-49 197.2 112 80.4
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 7.7e-49 197.2 112 82.1
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 1.0e-48 196.8 112 81.2
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 1.3e-48 196.4 112 82.1
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 1.3e-48 196.4 112 82.1
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 1.3e-48 196.4 112 82.1
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 2.2e-48 195.7 112 81.2
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 2.2e-48 195.7 112 82.1
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 2.2e-48 195.7 112 81.2
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 3.8e-48 194.9 112 79.5
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 3.8e-48 194.9 112 81.2
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 5.0e-48 194.5 112 79.5
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 6.5e-48 194.1 112 80.4
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 8.5e-48 193.7 112 80.4
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 8.5e-48 193.7 122 77.0
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 8.5e-48 193.7 112 80.4
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 8.5e-48 193.7 112 81.2
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 1.1e-47 193.4 112 78.6
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 1.9e-47 192.6 112 78.6
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 3.2e-47 191.8 112 81.2
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 7.2e-47 190.7 112 79.5
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 1.2e-46 189.9 112 78.6
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 1.2e-46 189.9 112 79.5
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.6e-46 189.5 112 77.7
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 2.7e-46 188.7 128 70.3
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 3.6e-46 188.3 112 78.6
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 3.6e-46 188.3 111 78.4
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 4.7e-46 188.0 112 78.6
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 4.7e-46 188.0 112 79.5
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 6.1e-46 187.6 112 75.9
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 1.0e-45 186.8 112 75.9
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 1.0e-45 186.8 111 77.5
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.8e-45 186.0 114 76.3
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 3.0e-45 185.3 145 64.8
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 4.0e-45 184.9 112 78.6
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 4.4e-44 181.4 139 64.0
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 9.7e-44 180.3 124 68.5
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.3e-43 179.9 127 70.1
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.8e-43 178.7 112 73.2
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 2.8e-43 178.7 112 73.2
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 2.8e-43 178.7 112 73.2
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 3.7e-43 178.3 127 69.3
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 3.7e-43 178.3 127 69.3
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 1.4e-42 176.4 98 85.7
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 2.4e-42 175.6 130 65.4
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 5.3e-42 174.5 107 73.8
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 5.3e-42 174.5 107 73.8
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 7.0e-42 174.1 100 81.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 2.7e-41 172.2 110 73.6
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 1.6e-38 162.9 98 77.6
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 8.0e-38 160.6 98 77.6
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.3e-37 159.1 96 77.1
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 3.0e-37 158.7 166 50.6
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 5.2e-37 157.9 99 72.7
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 5.2e-37 157.9 130 60.0
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 3.7e-35 151.8 108 65.7
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 6.3e-35 151.0 73 94.5
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 4.1e-34 148.3 73 93.2
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.7e-33 145.6 73 90.4
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 3.5e-33 145.2 73 91.8
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 4.5e-33 144.8 79 82.3
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 5.9e-33 144.4 79 83.5
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 7.7e-33 144.1 111 57.7
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.7e-32 142.9 125 59.2
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 6.5e-32 141.0 88 69.3
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 8.6e-32 140.6 98 67.3
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 2.5e-31 139.0 79 79.7
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 2.1e-30 136.0 86 76.7
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 5.4e-26 121.3 108 50.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 5.4e-26 121.3 125 52.8
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 7.0e-26 120.9 75 77.3
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 2.7e-25 119.0 87 62.1
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.0e-24 117.1 75 69.3
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 5.0e-24 114.8 78 61.5
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 5.0e-24 114.8 65 76.9
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 7.3e-23 110.9 69 78.3
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 2.6e-20 102.4 63 71.4
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.5e-17 92.0 84 56.0
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 3.5e-17 92.0 84 56.0
Hund21568 Selenicereus undatus HOM05D006200 ORTHO05D007569 5.9e-17 91.3 171 38.6
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 1.0e-16 90.5 50 80.0
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 6.8e-13 77.8 40 85.0
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 6.8e-13 77.8 54 74.1
C03p34670 Brassica napus HOM05D006200 ORTHO05D007569 2.6e-12 75.9 50 82.0
BolC3t15778H Brassica oleracea HOM05D006200 ORTHO05D007569 2.6e-12 75.9 50 82.0
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 3.9e-08 62.0 37 67.6
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 2.8e-06 55.8 65 46.2


User provided reference genes

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