Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.8e-48 194.9 96 100.0
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.3e-45 185.3 96 94.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 4.5e-38 161.0 96 85.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 5.9e-38 160.6 96 85.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 5.9e-38 160.6 96 85.4
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.8e-38 160.2 96 84.4
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.0e-37 159.8 96 84.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.0e-37 159.8 96 84.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.6e-37 156.8 96 83.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 9.5e-36 153.3 96 82.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.5e-28 129.4 108 63.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.9e-28 129.0 101 64.4
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 7.3e-28 127.1 100 66.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 7.3e-28 127.1 100 66.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 7.3e-28 127.1 103 66.0
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.6e-27 125.9 97 67.0
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.1e-27 125.6 100 65.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.1e-27 125.6 100 65.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.8e-27 125.2 97 69.1
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-27 123.6 96 66.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-27 123.6 100 64.0
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.1e-26 123.2 109 60.6
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.4e-26 122.9 99 71.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.8e-26 122.5 100 64.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.5e-25 117.1 93 63.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.3e-21 105.5 88 63.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.3e-21 105.5 109 53.2
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.5e-20 102.8 111 48.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 7.3e-20 100.5 109 53.2
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 9.5e-20 100.1 98 50.0
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-19 99.8 106 48.1
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.6e-19 99.4 110 48.2
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 2.1e-19 99.0 114 48.2
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.8e-19 98.6 110 48.2
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.8e-19 98.6 104 51.9
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.6e-19 98.2 111 49.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.6e-19 98.2 109 48.6
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.7e-19 97.8 102 52.0
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 4.7e-19 97.8 110 47.3
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.7e-19 97.8 113 47.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.2e-19 97.4 113 48.7
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.2e-19 97.4 113 48.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 6.2e-19 97.4 104 51.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-18 95.9 113 47.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.3e-18 95.5 122 45.1
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.3e-18 95.5 113 47.8
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.3e-18 95.5 115 47.0
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.0e-18 94.7 115 47.8
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.2e-18 94.4 119 46.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.8e-18 94.0 117 46.2
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 8.9e-18 93.6 99 51.5
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.2e-17 93.2 116 44.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-17 92.8 109 47.7
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.5e-17 92.8 103 49.5
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.0e-17 92.4 103 49.5
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.4e-17 91.7 100 45.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.4e-17 91.7 109 45.9
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.4e-17 91.7 109 45.9
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.4e-17 91.7 109 45.9
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.3e-16 89.7 105 45.7
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.7e-16 89.4 107 45.8
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.2e-16 89.0 116 46.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.9e-16 87.8 108 46.3
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 6.4e-16 87.4 106 48.1
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.1e-15 86.7 98 44.9
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.1e-15 86.7 107 44.9
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.1e-15 86.7 107 44.9
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.1e-15 86.7 94 47.9
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-15 86.7 101 44.6
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.1e-15 86.7 108 44.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.4e-15 86.3 116 44.8
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.9e-15 85.9 109 44.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.4e-15 85.5 108 48.1
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.4e-15 85.5 108 48.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.2e-15 85.1 102 47.1
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.2e-15 85.1 102 47.1
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.2e-15 85.1 109 48.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.1e-15 84.7 110 47.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 7.1e-15 84.0 110 44.5
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.2e-15 83.6 111 47.7
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 1.6e-14 82.8 116 45.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.1e-14 82.4 123 41.5
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 2.7e-14 82.0 107 47.7
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.5e-14 81.6 108 42.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 3.5e-14 81.6 110 46.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.6e-14 81.3 111 45.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.6e-14 81.3 105 45.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.0e-14 80.9 106 40.6
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 6.0e-14 80.9 108 45.4
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 6.0e-14 80.9 119 42.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.0e-14 80.9 96 45.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.0e-13 80.1 107 44.9
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.0e-13 80.1 110 47.3
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.3e-13 79.7 104 41.3
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.3e-13 79.7 88 45.5
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.7e-13 79.3 87 44.8
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 2.3e-13 79.0 123 39.8
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.3e-13 79.0 86 44.2
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.0e-13 78.6 104 43.3
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.0e-13 78.6 105 43.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.9e-13 78.2 104 42.3
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.9e-13 78.2 119 38.7
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 5.1e-13 77.8 116 39.7
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.5e-12 76.3 98 44.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.5e-12 76.3 108 44.4
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.9e-12 75.9 51 60.8
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.5e-12 75.5 68 52.9
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.5e-12 75.5 106 42.5
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 4.3e-12 74.7 107 44.9
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 5.6e-12 74.3 84 45.2
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 7.3e-12 73.9 90 47.8
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.2e-11 73.2 106 42.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.6e-11 72.8 114 38.6
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.1e-11 72.4 97 40.2
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 2.8e-11 72.0 100 42.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.6e-11 71.6 107 38.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.7e-11 71.2 108 43.5
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 6.2e-11 70.9 100 43.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.1e-11 70.5 116 37.1
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.1e-10 70.1 116 37.1
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.1e-10 70.1 97 44.3
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-10 69.3 93 45.2
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-10 69.3 98 43.9
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 4.0e-10 68.2 112 41.1
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.2e-10 67.8 108 40.7
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 6.8e-10 67.4 110 38.2
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.9e-10 67.0 101 37.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.9e-10 67.0 108 39.8
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.5e-09 66.2 98 44.9
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-09 66.2 97 39.2
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.5e-09 66.2 114 37.7
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.5e-09 66.2 114 37.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.0e-09 65.9 104 41.3
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 5.8e-09 64.3 75 42.7
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 7.6e-09 63.9 107 38.3
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 2.4e-07 58.9 39 53.8
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 5.4e-07 57.8 51 52.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-06 56.6 102 36.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.6e-06 56.2 98 36.7
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 4.6e-06 54.7 111 34.2
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 4.6e-06 54.7 101 37.6


User provided reference genes

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