Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 1.7e-39 165.6 89 100.0
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 2.7e-21 105.1 65 84.6
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 8.8e-20 100.1 66 80.3
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 2.4e-17 92.0 64 76.6
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 7.0e-17 90.5 64 75.0
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 7.0e-17 90.5 64 75.0
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 7.0e-17 90.5 64 73.4
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 2.0e-16 89.0 64 71.9
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 2.0e-16 89.0 64 71.9
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 3.5e-16 88.2 64 71.9
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 3.5e-16 88.2 64 71.9
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 4.5e-16 87.8 64 70.3
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 1.3e-15 86.3 66 69.7
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.0e-12 76.6 67 58.2
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.4e-12 76.3 64 64.1
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 6.8e-12 73.9 59 66.1
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 2.0e-11 72.4 80 52.5
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 3.4e-11 71.6 60 63.3
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 5.7e-11 70.9 61 62.3
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 7.5e-11 70.5 60 63.3
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 9.8e-11 70.1 62 56.5
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 9.8e-11 70.1 60 65.0
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 1.3e-10 69.7 59 64.4
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 2.2e-10 68.9 51 66.7
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 2.8e-10 68.6 44 72.7
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 3.7e-10 68.2 64 59.4
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 3.7e-10 68.2 55 60.0
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 6.3e-10 67.4 40 85.0
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 6.3e-10 67.4 68 55.9
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 6.3e-10 67.4 61 57.4
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 1.1e-09 66.6 60 61.7
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.1e-09 66.6 60 61.7
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.4e-09 66.2 60 61.7
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.4e-09 66.2 60 61.7
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 1.8e-09 65.9 60 60.0
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 1.8e-09 65.9 60 63.3
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 1.8e-09 65.9 60 60.0
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.4e-09 65.5 60 60.0
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 2.4e-09 65.5 50 62.0
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 2.4e-09 65.5 60 60.0
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 3.1e-09 65.1 60 65.0
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 3.1e-09 65.1 60 60.0
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 4.1e-09 64.7 61 63.9
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 4.1e-09 64.7 43 69.8
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 4.1e-09 64.7 60 60.0
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 5.4e-09 64.3 75 50.7
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 5.4e-09 64.3 81 43.2
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 7.0e-09 63.9 67 55.2
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 7.0e-09 63.9 48 66.7
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 7.0e-09 63.9 52 61.5
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 9.2e-09 63.5 59 55.9
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 9.2e-09 63.5 60 60.0
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 1.2e-08 63.2 51 60.8
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.2e-08 63.2 60 58.3
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 1.6e-08 62.8 55 56.4
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 2.0e-08 62.4 52 59.6
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 2.0e-08 62.4 52 59.6
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 2.0e-08 62.4 66 54.5
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 2.7e-08 62.0 61 60.7
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 3.5e-08 61.6 59 57.6
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 3.5e-08 61.6 46 67.4
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 4.5e-08 61.2 50 62.0
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 5.9e-08 60.8 55 61.8
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 7.8e-08 60.5 60 56.7
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 7.8e-08 60.5 59 52.5
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 7.8e-08 60.5 60 61.7
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 7.8e-08 60.5 63 57.1
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.3e-07 59.7 49 61.2
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.3e-07 59.7 49 61.2
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.3e-07 59.7 49 61.2
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.3e-07 59.7 49 61.2
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 1.3e-07 59.7 61 59.0
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 1.3e-07 59.7 43 65.1
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 1.7e-07 59.3 52 53.8
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 1.7e-07 59.3 43 67.4
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 2.3e-07 58.9 43 60.5
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 3.9e-07 58.2 43 62.8
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.9e-07 58.2 49 59.2
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 3.9e-07 58.2 60 51.7
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 5.0e-07 57.8 40 67.5
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 5.0e-07 57.8 56 53.6
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 5.0e-07 57.8 59 47.5
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 1.5e-06 56.2 59 50.8
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 1.9e-06 55.8 55 52.7
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 2.5e-06 55.5 44 59.1
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 4.3e-06 54.7 42 61.9
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 5.6e-06 54.3 46 58.7
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 5.6e-06 54.3 49 63.3
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 5.6e-06 54.3 57 47.4


User provided reference genes

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