Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 0.0e+00 1164.1 579 100.0
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 0.0e+00 1119.8 582 95.9
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 0.0e+00 1089.7 577 94.5
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 3.7e-308 1060.8 576 91.7
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 4.8e-308 1060.4 580 90.7
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.2e-303 1045.8 584 90.9
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 5.5e-296 1020.4 583 86.6
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 5.7e-293 1010.4 577 87.9
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 4.8e-292 1007.3 579 87.6
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 6.9e-291 1003.4 577 87.5
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 7.7e-290 1000.0 576 87.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 2.2e-289 998.4 579 86.7
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 5.0e-289 997.3 576 86.3
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.1e-272 943.0 580 80.9
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 1.9e-256 889.0 581 75.6
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 2.7e-250 868.6 572 74.1
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 3.5e-250 868.2 573 74.5
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 5.9e-250 867.5 587 71.9
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.9e-249 865.1 589 73.0
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 2.9e-249 865.1 576 74.0
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 5.0e-249 864.4 584 72.9
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 5.0e-249 864.4 569 74.7
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 8.6e-249 863.6 576 73.3
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-248 863.2 584 72.8
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-248 863.2 584 72.8
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.5e-248 862.1 588 71.9
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.8e-247 858.6 572 72.9
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 2.8e-247 858.6 579 72.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 8.0e-247 857.1 582 72.7
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.3e-246 855.5 582 72.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 2.3e-246 855.5 567 74.4
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 3.1e-246 855.1 577 74.2
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 1.2e-245 853.2 572 73.8
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.7e-244 849.4 570 72.3
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.1e-243 846.7 581 71.8
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.4e-243 846.3 573 72.6
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.4e-243 845.5 565 73.1
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.1e-243 844.7 585 71.6
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.6e-242 842.8 569 72.1
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 6.0e-242 840.9 573 72.1
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.5e-240 836.3 575 70.3
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 1.5e-240 836.3 563 73.5
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 2.5e-240 835.5 566 71.0
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.5e-240 835.5 563 72.6
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 5.6e-240 834.3 562 72.4
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 1.6e-239 832.8 563 72.3
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 3.6e-239 831.6 561 73.1
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 4.0e-238 828.2 567 71.6
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 5.2e-238 827.8 562 72.2
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 6.8e-238 827.4 564 71.6
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 6.8e-238 827.4 564 71.6
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 6.8e-238 827.4 575 70.3
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 7.5e-237 823.9 573 71.9
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.7e-236 822.8 551 72.4
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.4e-235 819.7 563 72.1
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 2.4e-235 818.9 568 72.0
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.6e-234 816.2 601 69.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 2.1e-234 815.8 575 70.4
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 2.1e-234 815.8 570 71.1
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 6.0e-234 814.3 565 70.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.0e-233 813.5 567 70.0
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 3.0e-233 812.0 551 72.1
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 8.6e-233 810.4 582 69.4
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.9e-232 809.3 600 65.7
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 4.7e-231 804.7 565 70.4
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.1e-230 803.5 562 71.4
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 2.6e-229 798.9 564 68.8
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 4.9e-228 794.7 566 67.8
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 8.3e-228 793.9 581 68.8
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 8.3e-228 793.9 591 67.7
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 3.2e-227 792.0 571 69.9
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 3.2e-227 792.0 563 68.9
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 6.6e-225 784.3 586 68.1
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.5e-224 783.1 553 70.9
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 5.6e-224 781.2 568 67.8
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.8e-222 776.2 563 67.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 8.9e-222 773.9 569 68.5
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.4e-219 766.5 625 62.4
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 9.6e-208 727.2 567 64.2
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.0e-205 719.5 565 64.4
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 2.4e-203 712.6 466 73.2
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 3.2e-203 712.2 554 65.2
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 4.8e-199 698.4 470 72.6
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 3.4e-197 692.2 652 56.6
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 3.3e-192 675.6 462 71.6
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.8e-174 616.7 634 52.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.1e-174 615.5 415 72.0
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.1e-174 615.5 417 72.7
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 9.1e-174 614.4 628 52.2
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 9.1e-174 614.4 628 52.2
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 5.0e-172 608.6 412 73.5
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 4.8e-167 592.0 411 68.9
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 5.9e-165 585.1 399 72.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.7e-164 583.6 410 71.2
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.2e-161 572.0 397 70.5
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 5.3e-158 562.0 418 67.7
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 7.0e-158 561.6 570 53.7
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 1.6e-157 560.5 403 69.7
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.7e-154 549.7 539 52.5
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 8.0e-138 495.0 313 73.8
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 6.6e-132 475.3 307 73.0
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.6e-125 454.1 553 46.1
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.3e-116 423.7 316 65.8
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 8.6e-116 421.8 654 38.5
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 3.3e-99 366.7 238 76.5
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 9.9e-88 328.6 197 82.2
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 6.0e-77 292.7 529 36.9
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 3.7e-66 256.9 162 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 3.4e-64 250.4 414 36.2
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.2e-62 243.4 152 73.0
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 2.4e-57 227.6 137 75.2
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 3.8e-55 220.3 118 83.9
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 9.4e-54 215.7 126 79.4
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.2e-45 188.7 104 79.8
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.2e-40 172.2 110 76.4
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 3.8e-39 167.2 159 56.6
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.2e-30 137.1 160 45.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.2e-24 119.0 67 80.6
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.1e-14 85.9 54 70.4
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.1e-12 79.3 595 23.0
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 3.5e-08 64.3 214 25.7
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 3.5e-08 64.3 214 25.7
Sp6g25080 Schrenkiella parvula HOM05D002203 ORTHO05D002647 1.7e-07 62.0 214 24.3
Cre04.g212100 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 3.0e-07 61.2 140 29.3
Lj6C597G13 Lonicera japonica HOM05D002203 ORTHO05D002647 5.0e-07 60.5 277 23.8
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 6.6e-07 60.1 167 26.9
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 1.5e-06 58.9 92 33.7
Carub.0006s1123 Capsella rubella HOM05D002203 ORTHO05D002647 1.9e-06 58.5 231 24.2
Os03g0792500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.9e-06 58.5 168 29.2
Nitab4.5_0000458g0070 Nicotiana tabacum HOM05D002203 ORTHO05D002647 2.5e-06 58.2 157 26.1
THA.LOC104811301 Tarenaya hassleriana HOM05D002203 ORTHO05D002647 2.5e-06 58.2 222 23.4
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.3e-06 57.8 107 33.6
RcHm_v2.0_Chr6g0291001 Rosa chinensis HOM05D002203 ORTHO05D002647 3.3e-06 57.8 233 23.2
Peaxi162Scf00641g00816 Petunia axillaris HOM05D002203 ORTHO05D002647 4.3e-06 57.4 157 27.4
Aa31LG3G14610 Aethionema arabicum HOM05D002203 ORTHO05D002647 7.3e-06 56.6 223 24.2
CBR_g46594 Chara braunii HOM05D002203 ORTHO05D002647 7.3e-06 56.6 163 25.2
Pp3c11_17010 Physcomitrium patens HOM05D002203 ORTHO05D002647 7.3e-06 56.6 169 26.6
TWI59G0890 Tripterygium wilfordii HOM05D002203 ORTHO05D002647 9.5e-06 56.2 209 23.4


User provided reference genes

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