Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 4.7e-109 397.9 204 100.0
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.4e-97 359.8 202 86.1
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 5.0e-95 351.3 202 88.6
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 1.4e-92 343.2 205 83.4
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 1.9e-86 322.8 203 79.3
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 2.5e-86 322.4 204 81.4
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.1e-81 307.0 202 73.8
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 2.1e-80 302.8 204 72.5
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 2.1e-80 302.8 204 72.5
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 2.1e-80 302.8 204 73.0
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 4.6e-80 301.6 204 73.0
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 2.9e-74 282.3 180 73.3
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 3.5e-72 275.4 180 71.7
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 4.6e-72 275.0 180 70.6
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 6.6e-71 271.2 193 65.8
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.1e-70 270.4 178 72.5
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.9e-70 269.6 193 65.3
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.5e-70 269.2 174 71.3
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.5e-70 269.2 174 71.3
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 2.5e-70 269.2 175 70.9
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.6e-69 266.5 182 68.7
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.6e-69 266.5 179 69.3
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 1.6e-69 266.5 180 68.9
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 3.6e-69 265.4 178 68.5
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 3.6e-69 265.4 181 66.9
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 4.8e-69 265.0 192 64.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 6.2e-69 264.6 174 70.7
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 6.2e-69 264.6 180 68.3
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 6.2e-69 264.6 180 68.9
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 6.2e-69 264.6 178 68.5
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 8.1e-69 264.2 180 67.2
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 8.1e-69 264.2 173 71.7
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 1.8e-68 263.1 182 67.0
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.8e-68 263.1 180 67.8
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.4e-68 262.7 177 70.1
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 2.4e-68 262.7 177 69.5
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 6.9e-68 261.2 174 68.4
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 9.0e-68 260.8 174 70.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 9.0e-68 260.8 174 70.1
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 9.0e-68 260.8 177 68.9
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 1.5e-67 260.0 181 66.9
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.6e-67 259.2 175 69.7
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.6e-67 259.2 175 69.7
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.6e-67 259.2 181 66.3
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 4.4e-67 258.5 170 71.2
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 5.8e-67 258.1 176 68.2
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 5.8e-67 258.1 183 66.1
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.3e-66 256.9 178 68.0
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 1.7e-66 256.5 169 68.6
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.7e-66 256.5 178 66.9
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.2e-66 256.1 177 66.1
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 2.2e-66 256.1 177 68.4
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 2.2e-66 256.1 173 68.2
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.9e-66 255.8 182 67.0
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 1.4e-65 253.4 182 65.9
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.9e-65 253.1 170 69.4
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 3.2e-65 252.3 181 67.4
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 4.2e-65 251.9 193 61.1
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.2e-65 251.9 172 69.8
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 4.2e-65 251.9 168 70.8
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.2e-65 251.9 168 70.8
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.2e-65 251.9 168 70.8
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.2e-65 251.9 168 70.8
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.2e-65 251.9 182 66.5
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 5.4e-65 251.5 178 66.3
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 5.4e-65 251.5 173 67.1
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 7.1e-65 251.1 168 69.6
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 9.3e-65 250.8 170 68.8
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.2e-64 250.4 173 67.6
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.6e-64 250.0 170 70.0
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.6e-64 250.0 178 65.2
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.1e-64 249.6 166 70.5
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 2.1e-64 249.6 201 61.2
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.5e-64 248.8 165 70.9
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 4.6e-64 248.4 170 69.4
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 7.9e-64 247.7 193 59.6
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 7.9e-64 247.7 168 67.9
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 7.9e-64 247.7 173 65.9
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 7.9e-64 247.7 183 65.0
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.0e-63 247.3 173 65.3
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 1.0e-63 247.3 173 65.3
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.0e-63 247.3 173 65.3
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.3e-63 246.1 166 68.1
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.3e-63 246.1 170 68.8
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.3e-63 246.1 173 64.7
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 3.9e-63 245.4 182 63.7
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.9e-63 245.4 182 66.5
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 6.6e-63 244.6 193 59.6
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 8.7e-63 244.2 174 66.1
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 8.7e-63 244.2 175 66.9
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 1.1e-62 243.8 175 66.9
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.1e-62 243.8 187 63.1
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 1.1e-62 243.8 168 66.1
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.5e-62 243.4 168 66.1
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.5e-62 243.4 170 65.3
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.5e-62 243.4 168 67.3
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 4.3e-62 241.9 168 65.5
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 7.4e-62 241.1 154 77.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 2.8e-61 239.2 182 62.1
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 3.6e-61 238.8 167 67.7
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.8e-60 236.5 179 65.9
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 2.4e-60 236.1 178 64.0
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 3.1e-60 235.7 174 63.8
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 5.3e-60 235.0 165 66.1
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.9e-60 234.6 197 58.4
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 6.9e-60 234.6 197 58.4
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 6.9e-60 234.6 165 64.8
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.6e-59 232.6 175 61.1
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 7.6e-59 231.1 198 57.6
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.2e-58 229.6 184 61.4
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 2.2e-58 229.6 180 60.0
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.9e-58 229.2 175 62.9
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.9e-57 226.5 182 61.5
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 3.2e-57 225.7 145 70.3
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.5e-56 222.2 181 60.2
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 6.0e-56 221.5 152 69.7
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.5e-51 205.3 176 58.0
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 5.8e-51 204.9 292 42.8
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 4.9e-50 201.8 128 70.3
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 9.3e-49 197.6 171 53.8
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.1e-48 196.4 134 69.4
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 3.0e-47 192.6 136 71.3
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 6.7e-47 191.4 164 54.9
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.4e-41 173.7 173 48.6
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 4.2e-41 172.2 123 68.3
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 2.0e-35 153.3 179 43.6
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 3.4e-35 152.5 168 51.2
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 3.8e-34 149.1 169 45.0
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.2e-33 145.6 157 46.5
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.0e-30 136.7 166 47.0
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.8e-29 132.1 158 46.2
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 8.5e-26 121.3 199 32.2
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.1e-25 120.9 78 64.1
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 7.2e-25 118.2 169 40.2
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.6e-16 90.5 166 33.7
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 5.7e-14 82.0 61 54.1
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 1.2e-11 74.3 58 53.4
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.3e-10 70.9 57 66.7
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 5.5e-09 65.5 65 52.3
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 6.1e-08 62.0 46 65.2
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 2.6e-06 56.6 151 27.2


User provided reference genes

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