Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.4e-90 335.5 174 100.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 3.3e-87 325.1 174 96.6
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 3.7e-86 321.6 174 96.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 3.1e-85 318.5 173 94.8
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 5.3e-85 317.8 173 95.4
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.5e-84 316.2 174 95.4
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.6e-84 315.5 173 94.8
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 4.5e-84 314.7 173 94.8
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 4.5e-84 314.7 173 94.8
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 5.8e-84 314.3 173 94.2
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.3e-83 313.2 173 93.1
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.9e-83 312.0 174 91.4
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 2.5e-74 282.3 164 87.2
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.4e-60 235.3 168 69.0
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.5e-59 231.1 165 70.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 6.5e-59 231.1 165 70.3
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.4e-58 229.9 169 68.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.9e-58 229.6 173 64.2
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 2.5e-58 229.2 169 69.2
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 4.2e-58 228.4 163 69.9
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 4.2e-58 228.4 165 69.7
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.2e-58 228.4 159 70.4
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 5.5e-58 228.0 173 67.1
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 7.2e-58 227.6 164 69.5
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.2e-57 226.9 161 70.2
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.6e-57 226.5 168 68.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.1e-57 226.1 166 66.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 2.1e-57 226.1 164 69.5
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.7e-57 225.7 162 69.1
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 4.7e-57 224.9 169 68.6
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 4.7e-57 224.9 164 68.9
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 7.9e-57 224.2 168 66.7
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.0e-56 223.8 168 65.5
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.4e-56 223.4 167 64.1
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.3e-56 222.6 173 68.2
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.1e-56 221.5 158 68.4
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.1e-55 220.3 161 66.5
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 1.5e-55 219.9 163 66.3
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.5e-55 219.9 162 66.7
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.5e-55 219.9 162 66.7
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 9.7e-55 217.2 165 66.1
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 9.7e-55 217.2 173 61.8
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.3e-54 216.9 163 65.0
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.7e-54 216.5 161 65.8
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.2e-54 216.1 166 66.3
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 2.8e-54 215.7 161 64.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 3.7e-54 215.3 170 64.7
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 4.8e-54 214.9 161 63.4
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.8e-54 214.9 161 65.2
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 6.3e-54 214.5 165 66.1
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 8.2e-54 214.2 162 69.1
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.4e-53 212.6 174 63.2
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 4.1e-53 211.8 163 67.5
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.1e-53 211.8 163 67.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.3e-53 211.5 156 66.7
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.2e-52 210.3 153 68.0
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 2.0e-52 209.5 165 63.0
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.0e-52 209.5 163 66.9
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.0e-52 209.5 173 65.3
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 2.0e-52 209.5 155 70.3
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 7.7e-52 207.6 173 61.8
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 7.7e-52 207.6 164 67.1
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 1.3e-51 206.8 163 63.2
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 1.7e-51 206.5 163 65.6
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.7e-51 206.5 161 67.7
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 2.2e-51 206.1 158 64.6
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.9e-51 205.7 182 59.9
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.8e-51 205.3 163 65.0
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 3.8e-51 205.3 162 62.3
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.1e-50 203.8 161 62.1
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.1e-50 203.8 161 62.1
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.1e-50 203.8 162 61.7
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.9e-50 203.0 175 61.7
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.2e-50 202.2 164 64.6
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 5.5e-50 201.4 163 60.1
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 7.2e-50 201.1 154 64.3
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 7.2e-50 201.1 174 58.6
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 9.4e-50 200.7 162 64.8
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 9.4e-50 200.7 159 61.0
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.2e-49 200.3 135 76.3
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 3.6e-49 198.7 176 59.1
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 4.7e-49 198.4 149 65.8
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 4.7e-49 198.4 141 67.4
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 6.1e-49 198.0 176 59.1
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 3.9e-48 195.3 154 64.3
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 6.7e-48 194.5 164 59.1
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 7.4e-47 191.0 159 57.9
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 9.7e-47 190.7 137 69.3
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 9.7e-47 190.7 150 64.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.3e-46 190.3 211 49.3
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 3.7e-46 188.7 131 71.0
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 8.2e-46 187.6 163 61.3
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.4e-45 186.8 217 48.8
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.4e-45 186.8 156 59.6
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.4e-45 186.0 168 58.3
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 4.1e-45 185.3 154 59.1
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 9.1e-45 184.1 169 55.6
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.0e-44 183.0 145 62.8
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.7e-43 179.9 147 62.6
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 2.9e-43 179.1 175 57.1
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-42 176.8 133 66.9
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 7.2e-42 174.5 173 54.3
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 1.0e-40 170.6 139 61.2
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 8.8e-40 167.5 145 61.4
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 3.7e-38 162.2 149 53.7
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 6.3e-38 161.4 134 62.7
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.1e-37 160.6 132 61.4
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 9.1e-37 157.5 149 50.3
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 4.5e-36 155.2 108 69.4
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 9.4e-34 147.5 128 60.2
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-31 139.4 111 64.0
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.4e-31 138.7 86 76.7
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 2.2e-30 136.3 88 71.6
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.4e-29 133.7 104 63.5
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.6e-28 130.2 127 57.5
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.5e-28 129.0 78 78.2
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.3e-27 127.1 116 58.6
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.1e-25 118.2 85 68.2
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 6.1e-25 118.2 135 41.5
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 3.1e-21 105.9 99 55.6
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 3.1e-21 105.9 66 74.2
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.7e-20 102.8 120 40.8
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 1.5e-18 97.1 53 84.9
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.5e-18 97.1 54 87.0
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 4.0e-16 89.0 52 78.8
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.6e-15 86.3 84 57.1
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.8e-15 84.3 70 60.0
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.8e-15 84.3 70 60.0
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 9.8e-15 84.3 60 66.7
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.4e-13 79.7 56 69.6
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 1.1e-10 70.9 85 34.1


User provided reference genes

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