Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 0.0e+00 2140.5 1228 100.0
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 0.0e+00 1833.9 1242 86.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 0.0e+00 1602.4 1376 73.1
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 0.0e+00 1471.8 1239 65.4
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 0.0e+00 1419.4 1240 64.4
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1364.4 1241 61.9
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 0.0e+00 1364.4 1241 61.9
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1358.2 1240 61.7
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1343.9 1242 61.6
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1333.2 1236 61.2
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 0.0e+00 1304.7 1239 60.7
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 0.0e+00 1181.8 1274 55.5
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 7.1e-261 904.8 1372 44.9
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 4.8e-132 476.9 1416 31.1
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 2.4e-131 474.6 1427 31.2
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 2.1e-127 461.5 1306 30.5
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 4.1e-123 447.2 1489 29.4
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 6.1e-119 433.3 1368 29.5
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 2.8e-116 424.5 1456 29.1
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.0e-115 419.9 1311 29.7
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.2e-114 419.1 1413 29.1
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.6e-111 408.7 1372 28.9
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 1.5e-109 402.1 1407 31.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.0e-109 401.7 1373 28.6
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 1.7e-108 398.7 1440 30.2
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.4e-107 395.6 1510 29.5
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 7.0e-107 393.3 1389 28.5
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 3.5e-106 391.0 1484 28.2
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 5.9e-106 390.2 1425 28.8
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 2.5e-104 384.8 1250 30.7
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 5.5e-104 383.6 1319 28.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.4e-102 379.0 1414 28.4
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.3e-102 378.3 1430 28.4
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.7e-100 372.1 1388 28.2
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 3.5e-98 364.4 1414 27.5
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 8.5e-97 359.8 1426 27.2
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 6.8e-94 350.1 1365 27.9
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 8.8e-94 349.7 1409 27.7
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 4.4e-93 347.4 1366 28.0
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 5.7e-93 347.1 1241 29.1
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 7.5e-93 346.7 1360 27.3
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.3e-92 345.9 1241 29.1
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.2e-90 339.3 1365 27.3
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.7e-89 335.5 1354 27.8
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 1.6e-87 328.9 1336 26.2
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.1e-87 328.6 1357 27.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 4.7e-87 327.4 1404 27.6
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 4.0e-86 324.3 1496 26.2
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 4.4e-85 320.9 1285 27.9
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 6.3e-84 317.0 1382 26.5
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.4e-83 315.8 1353 26.9
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 2.4e-83 315.1 1393 26.4
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.2e-82 312.8 1122 28.4
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 5.9e-82 310.5 1376 27.5
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 1.0e-81 309.7 1361 26.7
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 8.6e-81 306.6 1309 27.1
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 3.6e-79 301.2 1337 27.4
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.6e-79 301.2 1370 26.5
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 8.0e-79 300.1 1292 27.2
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.0e-78 297.7 1243 26.8
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 6.8e-78 297.0 1296 26.6
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 8.9e-78 296.6 1263 26.9
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 4.9e-76 290.8 1356 26.6
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-75 287.7 1270 27.4
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.1e-75 287.7 1270 27.4
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 5.4e-75 287.3 1300 27.1
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 3.0e-73 281.6 1344 25.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.9e-72 278.9 1248 26.8
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.6e-72 277.3 1233 26.4
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 9.5e-72 276.6 1333 25.0
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.1e-71 275.4 1238 26.2
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 4.7e-71 274.2 1373 26.0
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.5e-69 269.2 1170 27.1
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 4.1e-67 261.2 502 34.5
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 1.7e-65 255.8 1328 26.0
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 5.1e-65 254.2 407 38.6
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 4.3e-64 251.1 449 37.0
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.5e-64 250.0 488 35.9
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.4e-62 246.1 1384 24.3
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.4e-62 246.1 1154 25.8
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.8e-62 243.8 444 35.8
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.9e-60 238.4 1390 24.1
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 2.4e-59 235.3 1527 24.2
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.9e-56 225.7 501 31.3
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 3.3e-56 224.9 444 34.5
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 9.5e-56 223.4 1373 25.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 6.2e-55 220.7 351 38.2
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 6.2e-55 220.7 257 51.4
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 4.4e-53 214.5 485 33.4
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 7.6e-53 213.8 1310 23.3
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 2.9e-52 211.8 429 31.9
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 4.9e-52 211.1 1306 24.6
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.1e-51 209.9 415 34.5
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.5e-48 198.7 1391 22.8
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 9.6e-48 196.8 397 33.5
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 3.6e-47 194.9 630 27.1
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 5.3e-46 191.0 461 31.0
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.6e-45 188.7 1380 22.8
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.8e-45 187.6 1121 24.8
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 5.6e-40 171.0 1327 22.5
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.8e-39 168.7 1246 22.9
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.8e-39 167.9 313 39.9
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.1e-38 166.8 261 44.4
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.4e-38 166.4 292 33.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.1e-38 165.2 320 32.5
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 4.0e-38 164.9 1256 23.2
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 6.9e-38 164.1 1319 22.7
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 5.8e-37 161.0 281 38.1
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 2.2e-36 159.1 1269 23.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.2e-35 155.2 1240 23.9
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 7.1e-35 154.1 405 26.9
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.3e-31 143.3 269 40.1
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.1e-31 140.6 322 31.4
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 3.4e-29 135.2 251 40.2
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 1.2e-26 126.7 133 55.6
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 1.2e-26 126.7 133 55.6
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 2.8e-23 115.5 141 44.7
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 2.4e-22 112.5 286 33.9
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.5e-21 109.8 373 29.8
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 2.0e-21 109.4 87 63.2
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 2.0e-21 109.4 87 63.2
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-18 100.1 140 40.7
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-16 93.2 140 50.0
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 9.7e-16 90.5 129 38.8
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-14 85.9 133 45.1
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 5.3e-14 84.7 286 29.7
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.5e-13 83.2 144 35.4
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 4.2e-11 75.1 90 42.2
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.1e-10 72.8 134 32.1
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.5e-08 66.6 70 50.0
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 3.3e-08 65.5 82 46.3
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 3.3e-08 65.5 126 38.9
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 9.7e-08 63.9 115 41.7
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 2.2e-07 62.8 106 34.0
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 3.7e-07 62.0 125 32.8


User provided reference genes

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