Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.6e-83 310.8 152 100.0
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.7e-69 265.4 150 84.0
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.9e-64 247.7 156 77.6
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-58 229.9 156 73.1
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-58 229.9 156 72.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.6e-56 222.2 156 68.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.6e-53 211.8 139 72.7
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.4e-51 204.9 213 53.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.0e-44 182.2 172 54.7
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-43 180.3 171 55.0
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.7e-43 177.9 152 60.5
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.4e-43 177.6 152 59.9
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.4e-43 177.6 152 59.9
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.7e-43 177.2 172 54.7
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.3e-42 176.8 173 54.9
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-42 176.0 171 53.8
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.3e-42 174.5 152 59.9
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-40 169.9 153 56.2
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.4e-36 156.8 173 49.7
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 3.3e-35 152.1 173 48.0
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 1.5e-30 136.7 168 47.0
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.0e-28 130.6 174 44.3
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.8e-27 124.0 170 44.1
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.4e-25 119.4 163 39.9
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.4e-25 119.4 164 43.3
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 4.1e-25 118.6 140 45.7
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 4.1e-25 118.6 175 42.9
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 4.1e-25 118.6 175 42.9
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 2.0e-24 116.3 174 40.2
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-24 116.3 174 40.2
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 2.0e-24 116.3 174 40.2
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.7e-24 115.9 172 40.1
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 5.5e-22 108.2 174 39.7
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 5.5e-22 108.2 174 39.7
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 5.5e-22 108.2 174 39.7
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 8.0e-21 104.4 161 39.1
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 8.0e-21 104.4 161 39.1
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 8.0e-21 104.4 161 39.1
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-20 103.6 150 40.0
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 1.8e-20 103.2 163 39.3
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 3.0e-20 102.4 161 39.1
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.0e-20 102.1 163 37.4
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 4.0e-20 102.1 161 39.1
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 5.2e-20 101.7 161 37.3
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 6.8e-20 101.3 161 37.9
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 6.8e-20 101.3 163 38.7
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 6.8e-20 101.3 161 37.9
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-19 99.8 145 39.3
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 5.7e-19 98.2 161 37.3
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 5.7e-19 98.2 161 37.3
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 7.5e-19 97.8 161 37.3
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 7.5e-19 97.8 161 37.3
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 7.5e-19 97.8 161 37.3
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 9.8e-19 97.4 161 37.9
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 1.3e-18 97.1 161 37.3
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 1.3e-18 97.1 161 37.3
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 3.7e-18 95.5 133 41.4
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 4.9e-18 95.1 144 36.8
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.4e-17 92.8 156 35.3
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.1e-17 92.0 157 35.0
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 2.0e-16 89.7 106 41.5
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.5e-16 89.0 148 35.1
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.8e-16 87.8 158 34.8
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.8e-16 87.8 154 35.1
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.9e-15 85.9 153 33.3
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 3.8e-15 85.5 133 37.6
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 4.3e-14 82.0 78 47.4
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 9.5e-14 80.9 90 41.1
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 5.7e-11 71.6 78 34.6
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.7e-10 70.1 147 27.2
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 2.9e-10 69.3 54 53.7
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 3.7e-10 68.9 142 32.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 8.3e-10 67.8 55 49.1
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 4.1e-09 65.5 98 30.6
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 7.0e-09 64.7 74 37.8
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 7.0e-09 64.7 146 29.5
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 2.7e-08 62.8 78 34.6
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 2.7e-08 62.8 71 42.3
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 3.5e-08 62.4 149 27.5
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 4.6e-08 62.0 149 27.5
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 4.6e-08 62.0 71 39.4
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.6e-08 62.0 49 55.1
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 5.9e-08 61.6 147 25.9
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 5.9e-08 61.6 149 27.5
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 5.9e-08 61.6 81 33.3
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.0e-07 60.8 93 33.3
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.3e-07 60.5 88 35.2
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.7e-07 60.1 77 35.1
QL05p012573 Quercus lobata HOM05D008402 ORTHO05D000988 3.0e-07 59.3 76 36.8
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 3.0e-07 59.3 76 34.2
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 8.6e-07 57.8 125 28.0
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 8.6e-07 57.8 96 27.1
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.1e-06 57.4 142 26.1
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.9e-06 56.6 125 24.8
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.3e-06 55.8 138 24.6
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 3.3e-06 55.8 147 25.2
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 3.3e-06 55.8 64 37.5
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.3e-06 55.8 147 25.2
RcHm_v2.0_Chr5g0073281 Rosa chinensis HOM05D012941 ORTHO05D009651 4.3e-06 55.5 110 29.1
RcHm_v2.0_Chr5g0073301 Rosa chinensis HOM05D012941 ORTHO05D009651 4.3e-06 55.5 110 29.1
RcHm_v2.0_Chr5g0073321 Rosa chinensis HOM05D012941 ORTHO05D009651 4.3e-06 55.5 110 29.1
RcHm_v2.0_Chr5g0073341 Rosa chinensis HOM05D012941 ORTHO05D009651 4.3e-06 55.5 110 29.1
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 5.6e-06 55.1 149 30.2
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 5.6e-06 55.1 133 29.3
Phvul.006G064400 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 5.6e-06 55.1 130 32.3
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 9.5e-06 54.3 82 29.3
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 9.5e-06 54.3 147 24.5
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 9.5e-06 54.3 138 27.5
RcHm_v2.0_Chr5g0073261 Rosa chinensis HOM05D012941 ORTHO05D009651 9.5e-06 54.3 110 29.1


User provided reference genes

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