Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.3e-103 379.8 200 100.0
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 5.5e-94 347.8 200 92.5
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 6.5e-87 324.3 200 85.0
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 7.4e-83 310.8 201 83.6
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 7.4e-83 310.8 201 83.6
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 1.1e-81 307.0 201 83.6
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.1e-81 307.0 201 82.6
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 1.1e-81 307.0 201 83.6
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.5e-75 286.6 202 79.2
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 3.4e-72 275.4 201 76.1
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 7.9e-69 264.2 202 73.8
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.7e-66 255.4 199 72.9
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 4.5e-56 221.9 204 64.7
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 5.7e-51 204.9 203 61.1
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.4e-49 200.3 208 58.2
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.2e-48 197.2 163 66.9
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 5.9e-48 194.9 154 68.2
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 1.3e-47 193.7 159 65.4
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 5.0e-47 191.8 151 68.9
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 2.5e-46 189.5 203 55.7
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.5e-46 189.5 213 54.5
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.3e-46 189.1 203 57.6
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 3.3e-46 189.1 203 57.6
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 3.3e-46 189.1 200 56.5
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 4.2e-46 188.7 161 65.8
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 5.5e-46 188.3 203 57.6
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 7.2e-46 188.0 159 67.3
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 2.1e-45 186.4 138 71.7
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 6.1e-45 184.9 186 58.6
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 6.1e-45 184.9 185 58.9
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 6.1e-45 184.9 185 61.6
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 8.0e-45 184.5 154 63.6
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.8e-44 183.3 159 64.2
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 3.0e-44 182.6 207 55.1
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 3.0e-44 182.6 159 64.8
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 4.0e-44 182.2 189 58.2
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 6.8e-44 181.4 174 59.2
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 8.9e-44 181.0 200 56.0
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 1.2e-43 180.6 201 55.7
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.5e-43 180.3 193 56.5
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.6e-43 179.5 193 56.0
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 2.6e-43 179.5 201 54.2
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 2.6e-43 179.5 138 69.6
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 7.5e-43 177.9 207 54.6
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.2e-42 176.4 208 52.9
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.8e-42 176.0 202 53.5
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 3.7e-42 175.6 203 51.7
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 8.3e-42 174.5 112 74.1
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 8.3e-42 174.5 196 55.6
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.1e-41 174.1 203 55.7
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.8e-41 173.3 146 63.0
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 1.8e-41 173.3 201 53.2
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 3.1e-41 172.6 154 64.3
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 4.1e-41 172.2 154 61.7
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 4.1e-41 172.2 145 64.8
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 5.4e-41 171.8 143 64.3
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 9.2e-41 171.0 214 50.0
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 9.2e-41 171.0 176 56.8
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.2e-40 170.6 177 55.9
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.2e-40 170.6 184 54.9
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.6e-40 170.2 154 61.7
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 1.6e-40 170.2 190 53.2
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.6e-40 170.2 146 64.4
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 1.6e-40 170.2 108 77.8
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.0e-40 169.9 208 52.4
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.0e-40 169.9 154 62.3
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 2.7e-40 169.5 154 59.7
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 3.5e-40 169.1 185 54.6
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 3.5e-40 169.1 211 50.7
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 4.5e-40 168.7 225 49.3
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 4.5e-40 168.7 154 62.3
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.5e-40 168.7 118 71.2
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 4.5e-40 168.7 211 49.8
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 4.5e-40 168.7 205 52.2
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 4.5e-40 168.7 212 50.9
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 5.9e-40 168.3 154 60.4
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 1.3e-39 167.2 153 60.1
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 2.3e-39 166.4 164 59.8
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 2.9e-39 166.0 110 73.6
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 5.0e-39 165.2 184 54.3
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 5.0e-39 165.2 118 70.3
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 6.6e-39 164.9 185 52.4
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 8.6e-39 164.5 202 51.5
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 1.5e-38 163.7 112 69.6
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 1.5e-38 163.7 156 59.6
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 2.5e-38 162.9 221 52.5
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 4.3e-38 162.2 185 52.4
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 1.2e-37 160.6 106 72.6
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 1.2e-37 160.6 190 51.6
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.1e-37 159.8 195 52.3
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.1e-37 159.8 203 52.2
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 2.8e-37 159.5 188 50.5
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 2.8e-37 159.5 163 54.6
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 3.6e-37 159.1 184 51.1
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 8.0e-37 157.9 207 53.6
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.0e-36 157.5 152 52.0
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 4.0e-36 155.6 185 49.2
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 6.8e-36 154.8 162 51.9
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 2.0e-35 153.3 153 48.4
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 7.5e-35 151.4 212 46.7
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 9.8e-35 151.0 106 59.4
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.5e-32 142.5 189 51.3
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 2.3e-31 139.8 243 43.2
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 8.6e-31 137.9 159 54.7
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.9e-30 136.7 138 58.0
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 2.5e-30 136.3 88 73.9
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 2.0e-27 126.7 126 51.6
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 2.2e-26 123.2 101 53.5
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.1e-25 120.9 109 53.2
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 2.4e-25 119.8 129 54.3
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 7.0e-25 118.2 180 41.1
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 8.1e-21 104.8 135 51.1
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 1.2e-16 90.9 72 59.7
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.1e-16 90.1 137 46.7
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 1.1e-09 67.8 144 43.8
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 6.0e-08 62.0 132 42.4
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 8.7e-07 58.2 39 74.4
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 1.1e-06 57.8 86 50.0


User provided reference genes

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