Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.7e-85 318.2 158 100.0
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-63 245.0 156 77.6
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.4e-62 241.5 156 78.2
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.7e-58 229.6 156 72.4
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.8e-58 228.4 156 72.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-57 226.9 156 72.4
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-54 216.9 135 76.3
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.7e-51 204.1 213 53.5
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.8e-47 191.0 174 58.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.0e-46 189.5 173 57.2
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.4e-44 182.6 174 55.7
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-42 176.4 173 53.8
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.1e-41 173.7 173 54.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.5e-41 173.3 158 58.9
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-41 172.9 158 58.9
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.9e-41 172.9 175 53.7
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.5e-41 172.6 158 59.5
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.2e-41 171.8 158 58.9
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.2e-39 164.9 161 52.8
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 7.5e-38 161.0 174 51.1
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.2e-35 153.7 165 49.1
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.6e-32 143.3 176 49.4
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 1.5e-30 136.7 175 46.3
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 1.5e-30 136.7 175 46.3
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 1.5e-30 136.7 175 46.3
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.0e-30 136.3 173 46.2
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 3.4e-30 135.6 175 46.9
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 3.4e-30 135.6 175 46.9
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 4.9e-29 131.7 175 46.3
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 4.9e-29 131.7 175 46.3
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 4.9e-29 131.7 175 46.3
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.1e-28 128.6 172 46.5
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.7e-27 125.9 130 49.2
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.7e-27 125.9 176 44.3
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-26 123.2 161 45.3
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-26 123.2 161 45.3
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.7e-26 123.2 161 45.3
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 2.3e-26 122.9 160 46.2
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 3.0e-26 122.5 161 44.7
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 6.6e-26 121.3 161 45.3
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 8.6e-26 120.9 160 45.6
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 8.6e-26 120.9 161 45.3
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-25 120.6 159 44.7
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 1.5e-25 120.2 161 44.1
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 1.5e-25 120.2 161 44.1
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.3e-25 118.6 163 43.6
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 5.6e-25 118.2 161 44.1
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 5.6e-25 118.2 161 44.1
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 7.3e-25 117.9 161 44.7
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 1.2e-24 117.1 161 43.5
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 1.2e-24 117.1 161 43.5
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.2e-24 117.1 167 39.5
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 1.6e-24 116.7 161 43.5
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 1.6e-24 116.7 161 43.5
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 1.6e-24 116.7 161 43.5
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 2.0e-22 109.8 141 44.0
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.6e-19 100.1 123 41.5
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-19 99.8 130 40.0
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 8.6e-18 94.4 129 36.4
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.1e-17 94.0 128 38.3
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.9e-17 93.2 111 39.6
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.6e-17 91.7 159 34.6
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.1e-16 89.7 160 34.4
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 2.8e-16 89.4 152 39.5
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.1e-16 87.8 162 34.0
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-15 87.0 130 38.5
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 4.0e-15 85.5 141 39.7
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 5.2e-15 85.1 77 51.9
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.2e-14 84.0 161 31.7
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 3.4e-14 82.4 141 38.3
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 2.9e-13 79.3 123 37.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.3e-10 70.5 55 52.7
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 3.9e-10 68.9 98 32.7
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 5.1e-10 68.6 113 32.7
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 113 32.7
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 8.6e-10 67.8 74 40.5
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.1e-09 67.4 143 30.1
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.9e-09 66.6 77 35.1
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 3.3e-09 65.9 125 32.8
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 3.3e-09 65.9 70 44.3
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.2e-08 63.9 105 32.4
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 1.6e-08 63.5 143 30.1
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 1.6e-08 63.5 72 40.3
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 3.6e-08 62.4 164 28.7
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 4.7e-08 62.0 124 29.8
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 4.7e-08 62.0 124 29.8
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 4.7e-08 62.0 124 32.3
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 4.7e-08 62.0 124 29.8
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 4.7e-08 62.0 79 36.7
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 6.2e-08 61.6 124 29.0
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 8.1e-08 61.2 124 30.6
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 8.1e-08 61.2 124 29.0
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 8.1e-08 61.2 72 36.1
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-07 60.8 124 29.0
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.1e-07 60.8 105 32.4
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 1.4e-07 60.5 124 28.2
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.4e-07 60.5 124 29.0
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.8e-07 60.1 68 41.2
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.3e-07 59.7 142 24.6
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 2.3e-07 59.7 109 28.4
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 3.1e-07 59.3 124 28.2
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 3.1e-07 59.3 124 32.3
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 3.1e-07 59.3 124 32.3
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 4.0e-07 58.9 154 27.9
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 4.0e-07 58.9 109 30.3
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 4.0e-07 58.9 75 37.3
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 5.2e-07 58.5 127 28.3
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-07 58.2 123 29.3
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-07 58.2 123 29.3
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-07 58.2 123 29.3
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 8.9e-07 57.8 147 27.2
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.2e-06 57.4 117 28.2
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-06 57.4 123 28.5
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.2e-06 57.4 149 27.5
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.5e-06 57.0 123 28.5
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 2.0e-06 56.6 106 29.2
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 2.0e-06 56.6 124 28.2
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 2.0e-06 56.6 123 27.6
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 2.0e-06 56.6 73 37.0
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.6e-06 56.2 137 24.8
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.6e-06 56.2 106 27.4
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 2.6e-06 56.2 146 28.8
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-06 55.8 167 27.5
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 4.4e-06 55.5 157 29.9
Medtr8g011770 Medicago truncatula HOM05D008402 ORTHO05D000988 4.4e-06 55.5 78 30.8
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 5.8e-06 55.1 154 27.9
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 5.8e-06 55.1 123 28.5
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 7.6e-06 54.7 72 40.3
Medtr8g011760 Medicago truncatula HOM05D008402 ORTHO05D000988 7.6e-06 54.7 80 30.0
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 9.9e-06 54.3 123 28.5
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 9.9e-06 54.3 64 37.5


User provided reference genes

Program Settings