Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-83 313.2 152 100.0
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-69 266.2 150 84.0
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.8e-63 245.0 156 78.2
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.9e-62 242.7 158 75.3
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.6e-61 238.4 156 75.0
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-60 236.5 156 72.4
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-57 226.1 141 77.3
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.0e-55 220.3 215 55.8
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.2e-46 188.3 152 63.2
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.2e-46 187.6 171 56.7
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.7e-45 185.7 172 55.8
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.1e-45 184.5 171 56.7
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.0e-44 182.2 171 56.1
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.9e-44 181.8 172 57.0
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-43 180.3 152 60.5
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.1e-43 180.3 152 60.5
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.3e-43 178.7 153 56.9
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.7e-43 177.2 152 60.5
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.6e-40 169.1 173 53.2
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.1e-38 163.7 173 52.0
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.8e-34 149.1 168 49.4
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.0e-31 140.6 174 46.6
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 2.1e-29 132.9 174 45.4
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 2.1e-29 132.9 174 45.4
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.7e-29 132.5 172 44.8
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.0e-29 131.0 170 45.3
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-28 130.2 174 43.1
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 1.4e-28 130.2 174 43.1
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-28 130.2 174 43.1
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.8e-28 129.8 164 43.9
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 8.8e-28 127.5 164 43.9
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-27 125.9 122 53.3
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 4.8e-26 121.7 174 42.0
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 4.8e-26 121.7 174 42.0
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 4.8e-26 121.7 174 42.0
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 1.8e-25 119.8 163 44.2
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 7.0e-25 117.9 163 43.6
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 6.5e-23 111.3 163 39.9
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-22 110.5 161 41.6
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-22 110.5 161 41.6
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 1.1e-22 110.5 161 41.6
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 5.5e-22 108.2 161 41.6
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 7.2e-22 107.8 161 39.8
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 9.5e-22 107.5 161 40.4
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 9.5e-22 107.5 161 40.4
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 1.2e-21 107.1 161 39.8
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 1.2e-21 107.1 161 41.0
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.6e-21 106.7 149 42.3
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 8.0e-21 104.4 161 39.8
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 8.0e-21 104.4 161 39.8
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-20 104.0 161 39.8
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-20 104.0 161 39.8
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-20 104.0 161 39.8
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 1.4e-20 103.6 161 39.1
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-20 103.6 161 39.1
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 2.0e-19 99.8 125 45.6
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-19 99.8 143 37.8
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.7e-18 96.7 142 35.2
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 3.7e-18 95.5 154 39.6
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 6.3e-18 94.7 125 41.6
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.3e-18 94.7 150 34.7
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 4.1e-17 92.0 142 35.2
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.1e-17 92.0 149 34.9
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.0e-16 89.7 141 32.6
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.7e-16 89.4 115 38.3
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.5e-16 88.6 144 34.0
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.9e-16 88.2 145 33.1
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 1.3e-15 87.0 78 51.3
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 4.3e-14 82.0 123 36.6
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 8.9e-12 74.3 138 35.5
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.2e-11 73.9 54 59.3
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 3.4e-11 72.4 55 54.5
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 7.5e-11 71.2 78 37.2
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 2.9e-10 69.3 97 30.9
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 3.7e-10 68.9 146 29.5
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 4.9e-10 68.6 109 30.3
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 8.3e-10 67.8 109 30.3
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.8e-09 66.6 93 35.5
Psat4g199200 Pisum sativum HOM05D008402 ORTHO05D000988 1.8e-09 66.6 128 28.9
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.2e-09 65.9 100 35.0
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 4.1e-09 65.5 71 42.3
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 7.0e-09 64.7 125 31.2
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 7.0e-09 64.7 147 27.9
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.6e-08 63.5 133 29.3
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.7e-08 62.8 69 40.6
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 5.9e-08 61.6 149 31.5
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 5.9e-08 61.6 160 26.9
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 7.8e-08 61.2 79 34.2
PGR031G1959 Punica granatum HOM05D007923 ORTHO05D009651 1.0e-07 60.8 84 35.7
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.0e-07 60.8 78 33.3
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.3e-07 60.5 84 28.6
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.3e-07 60.5 108 27.8
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.7e-07 60.1 136 24.3
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-07 59.7 156 28.2
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 2.3e-07 59.7 71 38.0
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.0e-07 59.3 140 25.7
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 3.9e-07 58.9 107 29.0
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 3.9e-07 58.9 71 36.6
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 5.0e-07 58.5 125 25.6
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 5.0e-07 58.5 124 28.2
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 5.0e-07 58.5 124 28.2
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 5.0e-07 58.5 124 28.2
Lj1g0018215 Lotus japonicus HOM05D008402 ORTHO05D000988 5.0e-07 58.5 112 30.4
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 5.0e-07 58.5 76 35.5
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 6.6e-07 58.2 124 27.4
Prupe.2G101000 Prunus persica HOM05D008521 ORTHO05D000988 8.6e-07 57.8 95 31.6
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.1e-06 57.4 105 29.5
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-06 57.4 124 25.8
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-06 57.4 147 26.5
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-06 57.4 150 26.7
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-06 57.4 124 27.4
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-06 57.4 150 26.7
Eucgr.B01478 Eucalyptus grandis HOM05D013157 ORTHO05D017001 1.1e-06 57.4 83 38.6
Medtr8g011770 Medicago truncatula HOM05D008402 ORTHO05D000988 1.1e-06 57.4 134 26.9
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.1e-06 57.4 88 34.1
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-06 57.0 147 26.5
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 1.5e-06 57.0 99 30.3
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.5e-06 57.0 77 33.8
Medtr8g011760 Medicago truncatula HOM05D008402 ORTHO05D000988 1.5e-06 57.0 134 25.4
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.9e-06 56.6 111 26.1
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 1.9e-06 56.6 147 25.9
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 1.9e-06 56.6 150 26.0
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.5e-06 56.2 124 29.0
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 2.5e-06 56.2 147 26.5
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 3.3e-06 55.8 124 26.6
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 3.3e-06 55.8 150 26.0
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 73 39.7
Gohir.D05G328710 Gossypium hirsutum HOM05D002073 ORTHO05D001803 3.3e-06 55.8 73 39.7
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.6e-06 55.1 73 38.4
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 7.3e-06 54.7 124 27.4
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 7.3e-06 54.7 124 27.4
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 7.3e-06 54.7 154 27.3
QL02p094721 Quercus lobata HOM05D043071 ORTHO05D025275 7.3e-06 54.7 82 32.9
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 9.5e-06 54.3 147 23.8
Phvul.006G064400 Phaseolus vulgaris HOM05D008402 ORTHO05D000988 9.5e-06 54.3 138 31.2


User provided reference genes

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