Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.0e-212 741.1 362 100.0
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 7.9e-184 647.1 343 92.1
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.3e-181 639.8 362 86.7
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 4.1e-180 634.8 318 95.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 4.5e-179 631.3 361 85.3
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.2e-176 623.2 362 84.8
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.6e-176 622.9 362 85.1
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.6e-176 622.9 362 85.1
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 4.8e-173 611.3 362 83.4
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 4.1e-172 608.2 318 92.1
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 2.0e-171 605.9 362 81.8
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 5.9e-171 604.4 362 81.5
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 6.5e-170 600.9 362 81.2
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 6.1e-168 594.3 362 80.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.4e-166 588.2 318 89.0
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 8.2e-165 583.9 318 88.4
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.0e-163 579.3 318 87.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.5e-163 578.2 318 86.8
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 1.0e-162 577.0 333 82.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.1e-153 547.0 318 82.4
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 8.0e-144 514.2 316 75.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.3e-143 512.7 316 75.0
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 5.7e-142 508.1 321 73.5
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 7.5e-142 507.7 316 73.7
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.2e-141 506.1 319 73.7
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 2.2e-141 506.1 316 74.1
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.8e-141 505.8 319 74.0
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.7e-141 505.4 316 74.7
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.3e-141 504.6 318 73.6
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.3e-141 504.2 319 73.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.4e-140 502.7 322 73.9
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 4.1e-140 501.9 337 70.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 4.1e-140 501.9 319 73.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.4e-140 501.5 317 74.1
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 9.1e-140 500.7 325 72.0
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 9.1e-140 500.7 317 73.5
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 2.0e-139 499.6 317 73.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 5.9e-139 498.0 316 74.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-138 496.9 317 73.5
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 2.2e-138 496.1 316 73.1
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.9e-138 495.7 316 72.2
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 3.8e-138 495.4 318 73.0
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 3.8e-138 495.4 316 73.1
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 5.0e-138 495.0 317 72.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.1e-137 493.8 360 66.4
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.5e-137 493.4 316 71.8
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.2e-137 491.9 316 70.9
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 5.5e-137 491.5 345 69.3
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 7.2e-137 491.1 340 68.8
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 9.5e-137 490.7 317 73.2
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 4.7e-136 488.4 321 72.9
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 6.1e-136 488.0 316 72.2
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 1.0e-135 487.3 351 68.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.0e-135 487.3 320 72.2
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.0e-135 485.3 316 71.8
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 5.2e-135 485.0 321 71.3
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 5.2e-135 485.0 342 68.4
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 6.8e-135 484.6 303 74.6
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.2e-134 483.8 316 69.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.0e-134 483.0 317 70.7
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.4e-134 482.3 317 70.0
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.7e-134 481.5 316 71.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 9.8e-134 480.7 317 71.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.7e-133 478.8 316 70.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 6.3e-133 478.0 369 63.1
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 1.8e-132 476.5 319 69.3
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.1e-132 475.7 316 70.9
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 4.1e-132 475.3 316 68.0
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.2e-131 473.8 316 69.6
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.2e-131 473.8 318 69.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.6e-131 473.4 317 69.4
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.6e-131 473.4 328 64.9
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.0e-131 473.0 318 69.5
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.0e-131 473.0 318 69.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.5e-131 472.2 319 69.6
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.5e-131 471.9 331 66.8
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 7.8e-131 471.1 319 69.0
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.0e-130 470.7 320 70.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 1.0e-130 470.7 316 68.7
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.3e-130 470.3 316 69.0
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.3e-130 469.5 316 68.7
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 5.0e-130 468.4 317 68.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.0e-130 468.4 316 67.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 5.0e-130 468.4 319 68.7
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 6.6e-130 468.0 319 68.3
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 8.6e-130 467.6 313 69.0
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-129 466.8 316 68.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.9e-129 466.5 319 67.7
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 3.3e-129 465.7 318 68.9
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 7.3e-129 464.5 316 67.4
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.8e-128 462.6 318 67.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.8e-128 462.6 368 60.9
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.7e-128 461.8 318 68.2
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 6.1e-128 461.5 316 67.1
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 6.1e-128 461.5 317 68.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 8.0e-128 461.1 316 69.6
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 1.0e-127 460.7 318 67.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 1.8e-127 459.9 316 68.0
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 8.9e-127 457.6 316 65.5
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.5e-126 456.8 316 65.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.4e-126 455.7 316 67.7
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 4.4e-126 455.3 320 68.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 4.4e-126 455.3 323 65.6
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 8.3e-125 451.1 316 65.5
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.1e-124 450.7 321 65.4
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.4e-124 449.5 343 64.1
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.4e-124 448.4 316 66.5
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 7.8e-123 444.5 318 65.1
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 3.3e-121 439.1 316 66.1
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.2e-120 437.2 390 56.4
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.6e-120 435.6 318 65.4
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.0e-119 434.1 316 63.9
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 1.4e-119 433.7 268 80.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.2e-118 430.6 290 70.0
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.0e-118 429.9 405 55.6
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.4e-118 428.7 293 65.5
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.1e-116 424.1 337 60.2
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 9.2e-116 421.0 317 65.3
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 9.2e-116 421.0 316 62.0
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.6e-115 420.2 316 62.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 5.0e-114 415.2 317 63.4
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.3e-113 412.5 284 69.4
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 3.3e-113 412.5 329 60.2
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.3e-113 412.1 321 64.5
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.6e-112 410.2 269 72.1
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-111 407.5 290 67.9
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.4e-109 398.3 316 59.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 5.4e-108 395.2 333 58.3
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 3.4e-102 375.9 338 54.7
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 4.1e-100 369.0 322 56.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.4e-100 368.6 318 58.2
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 9.2e-100 367.9 318 56.3
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.6e-99 367.1 319 55.8
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.3e-98 364.0 324 56.5
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 9.6e-97 357.8 305 58.4
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.9e-93 345.5 316 53.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.2e-92 342.4 231 77.5
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 4.6e-91 339.0 242 68.6
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.3e-90 337.4 293 57.0
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.4e-87 327.4 354 47.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.0e-82 309.7 211 73.0
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 5.8e-78 295.4 199 71.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.6e-73 278.9 183 72.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 9.0e-71 271.6 218 58.3
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.1e-65 254.6 165 70.9
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.9e-62 242.3 306 46.4
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.2e-60 236.5 181 65.7
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 2.9e-53 213.4 145 70.3
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 2.1e-51 207.2 149 75.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.1e-49 201.4 140 65.0
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.8e-47 194.1 148 60.1
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 8.8e-42 175.3 95 84.2
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.3e-41 173.3 130 63.1
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.5e-38 162.9 124 62.9
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.9e-37 160.2 109 67.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 4.1e-31 139.8 93 69.9
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.7e-29 134.4 93 64.5
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 8.5e-29 132.1 69 84.1
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 3.2e-28 130.2 72 87.5
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 2.2e-24 117.5 75 65.3
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 4.5e-22 109.8 74 66.2
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.7e-21 107.8 66 69.7
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.3e-21 107.5 90 53.3
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 6.5e-21 105.9 88 68.2
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 3.3e-20 103.6 161 44.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 8.0e-19 99.0 57 71.9
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.2e-11 75.1 42 81.0
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-09 67.4 80 50.0
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.7e-08 63.5 54 55.6


User provided reference genes

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