Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.5e-110 402.1 203 100.0
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.2e-104 383.3 198 97.5
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 4.5e-104 381.3 198 97.5
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-101 372.1 198 93.9
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.7e-101 372.1 198 94.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 3.6e-101 371.7 198 93.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.5e-99 366.3 200 92.0
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 2.6e-99 365.5 198 93.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 9.8e-99 363.6 192 94.3
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.8e-97 359.4 192 93.2
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.8e-97 359.4 192 93.2
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 1.5e-91 339.7 198 86.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.7e-88 328.9 198 82.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 9.5e-86 320.5 195 82.1
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 3.1e-84 315.5 197 77.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 6.8e-84 314.3 197 78.2
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.0e-83 312.8 197 78.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.4e-83 312.0 197 77.7
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.4e-83 312.0 197 77.2
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 3.4e-83 312.0 197 78.2
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 4.4e-83 311.6 197 76.6
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 7.5e-83 310.8 197 77.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 7.5e-83 310.8 197 76.6
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.2e-82 309.3 197 77.7
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 2.2e-82 309.3 197 77.7
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 2.9e-82 308.9 197 77.2
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 3.7e-82 308.5 193 82.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.7e-82 308.5 197 76.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.9e-82 308.1 197 74.6
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 6.4e-82 307.8 197 76.6
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.4e-82 307.8 196 76.5
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 8.3e-82 307.4 204 75.5
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.3e-82 307.4 197 76.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.1e-81 307.0 197 75.6
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.1e-81 307.0 193 78.2
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-81 307.0 197 76.6
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.4e-81 306.6 197 77.7
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 1.9e-81 306.2 214 72.9
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 2.4e-81 305.8 197 77.2
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 7.0e-81 304.3 198 76.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 7.0e-81 304.3 197 74.1
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.2e-80 303.5 197 75.6
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.2e-80 303.5 197 76.1
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.0e-80 302.8 197 76.1
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.5e-80 302.0 197 73.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.0e-80 301.2 197 74.1
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 7.8e-80 300.8 199 76.9
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 7.8e-80 300.8 199 76.9
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.0e-79 300.4 198 75.3
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.7e-79 299.7 192 77.1
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 2.3e-79 299.3 198 74.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.3e-79 299.3 196 77.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.3e-79 299.3 197 75.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 2.3e-79 299.3 197 73.1
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.3e-79 299.3 197 74.1
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 5.0e-79 298.1 165 92.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 5.0e-79 298.1 199 75.9
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 5.0e-79 298.1 198 76.8
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 6.6e-79 297.7 192 77.1
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 8.6e-79 297.4 198 73.2
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 8.6e-79 297.4 197 75.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.1e-78 297.0 197 74.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.5e-78 295.8 197 73.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 3.3e-78 295.4 197 78.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 5.6e-78 294.7 197 74.1
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.3e-78 294.3 198 74.2
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.2e-77 293.5 198 72.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.8e-77 292.4 197 74.6
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 3.6e-77 292.0 197 73.6
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 6.2e-77 291.2 192 75.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 6.2e-77 291.2 197 73.1
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.1e-76 288.9 197 71.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 3.1e-76 288.9 198 72.7
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 3.1e-76 288.9 197 73.6
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 5.2e-76 288.1 197 70.6
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 6.8e-76 287.7 216 69.0
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 8.9e-76 287.3 197 72.1
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.2e-75 287.0 198 71.7
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.5e-75 286.6 216 67.1
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 2.6e-75 285.8 198 72.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 3.4e-75 285.4 197 72.1
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 7.5e-75 284.3 194 73.2
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-74 283.5 197 75.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.3e-74 283.5 220 65.5
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.7e-74 283.1 197 71.6
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 1.7e-74 283.1 197 70.6
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.2e-74 282.7 198 71.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 4.9e-74 281.6 197 70.1
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.2e-73 278.9 225 63.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 4.6e-72 275.0 197 68.5
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-71 273.5 197 68.0
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.9e-71 271.9 198 68.7
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.5e-70 270.0 235 62.6
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.2e-69 266.9 198 66.7
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.6e-69 266.5 198 69.7
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 8.1e-69 264.2 172 75.0
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 5.2e-68 261.5 197 66.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.9e-68 260.8 170 77.1
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.3e-66 256.9 193 67.4
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 2.4e-65 252.7 173 72.3
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 6.0e-64 248.1 231 59.3
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.1e-63 245.0 166 74.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 4.3e-62 241.9 230 56.5
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-60 235.3 148 81.8
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 7.1e-57 224.6 168 66.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.3e-54 215.3 197 59.4
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 6.2e-53 211.5 149 70.5
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.4e-52 209.5 197 58.4
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-47 193.4 167 57.5
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 9.0e-44 181.0 184 53.8
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.4e-43 179.1 179 49.7
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.4e-41 173.7 178 47.2
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.0e-39 167.5 177 47.5
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.6e-32 143.7 139 59.0
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 8.7e-31 137.9 200 51.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 8.7e-31 137.9 200 50.5
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.5e-30 136.3 92 71.7
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.3e-22 109.4 171 38.6
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.6e-21 107.1 78 65.4
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-21 106.7 56 92.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 2.2e-21 106.7 56 92.9
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 5.9e-19 98.6 49 95.9
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-18 97.4 49 93.9
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-18 97.4 49 93.9
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.3e-18 97.4 49 93.9
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 2.2e-18 96.7 59 74.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 6.5e-18 95.1 47 95.7
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 6.5e-18 95.1 47 95.7
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 1.4e-15 87.4 56 80.4
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.7e-15 85.1 49 83.7
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-14 84.0 122 38.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 3.3e-14 82.8 73 58.9
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.7e-13 80.5 73 57.5
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 2.2e-13 80.1 60 68.3
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 3.7e-13 79.3 55 67.3
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 8.2e-13 78.2 91 49.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 1.1e-12 77.8 49 69.4
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 9.1e-12 74.7 50 70.0
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.0e-11 73.6 49 77.6
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 2.6e-11 73.2 89 49.4
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-10 70.5 59 52.5
BolC7t43933H Brassica oleracea HOM05D000003 ORTHO05D001498 2.5e-09 66.6 59 62.7
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 6.1e-08 62.0 186 30.1


User provided reference genes

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