Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 7.0e-130 467.2 227 100.0
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.8e-129 463.8 227 98.7
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.5e-127 459.5 227 97.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.5e-127 458.8 227 97.4
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.6e-126 456.1 227 96.5
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 1.0e-125 453.4 227 96.5
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.4e-125 453.0 227 96.0
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.8e-125 452.6 227 95.6
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 2.6e-124 448.7 227 94.7
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.4e-124 448.4 227 95.2
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 9.8e-124 446.8 227 94.3
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-123 445.3 227 95.2
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.9e-123 445.3 225 94.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.9e-123 445.3 225 94.2
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 2.9e-123 445.3 227 95.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.9e-123 445.3 225 94.2
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 3.7e-123 444.9 227 93.4
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 2.2e-115 419.1 227 87.7
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 226 82.7
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 2.5e-111 405.6 210 94.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.6e-110 402.9 226 83.6
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 2.8e-110 402.1 225 83.1
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 3.6e-110 401.7 221 85.1
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 6.2e-110 401.0 226 83.2
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 2.3e-109 399.1 226 82.3
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 8.9e-109 397.1 224 82.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.5e-108 396.4 226 81.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.0e-108 396.0 225 81.3
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 3.4e-108 395.2 226 81.9
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 5.8e-108 394.4 225 80.4
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 9.9e-108 393.7 221 81.4
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 9.9e-108 393.7 224 81.2
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 3.7e-107 391.7 221 83.3
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 4.9e-107 391.3 222 82.4
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 6.4e-107 391.0 223 81.2
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 6.4e-107 391.0 225 81.8
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 8.3e-107 390.6 224 82.1
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 8.3e-107 390.6 221 81.4
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 8.3e-107 390.6 221 81.9
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.1e-106 390.2 216 82.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.4e-106 389.8 222 81.5
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 1.4e-106 389.8 225 80.0
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.9e-106 389.4 221 81.9
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 226 79.6
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 3.2e-106 388.7 221 81.0
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 4.1e-106 388.3 224 82.6
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 5.4e-106 387.9 216 81.5
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.4e-106 387.9 225 80.4
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 7.1e-106 387.5 220 80.9
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 7.1e-106 387.5 225 81.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 7.1e-106 387.5 224 80.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 9.2e-106 387.1 216 83.3
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 9.2e-106 387.1 225 80.9
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 9.2e-106 387.1 225 80.0
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.2e-105 386.7 221 82.8
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.6e-105 386.3 225 79.6
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.6e-105 386.3 226 79.2
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.1e-105 386.0 224 81.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 80.5
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 2.1e-105 386.0 225 79.1
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.0
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 2.1e-105 386.0 216 82.4
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 2.1e-105 386.0 226 79.2
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 2.1e-105 386.0 224 81.2
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 2.7e-105 385.6 219 81.7
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.7e-105 385.6 225 79.6
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.5e-105 385.2 221 80.5
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.5e-105 385.2 224 79.5
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.5e-105 385.2 224 80.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 4.6e-105 384.8 222 79.3
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 4.6e-105 384.8 224 79.9
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 6.0e-105 384.4 224 79.0
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 6.0e-105 384.4 225 80.4
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.8e-105 384.0 225 80.0
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 7.8e-105 384.0 212 84.0
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 7.8e-105 384.0 219 81.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.0e-104 383.6 219 81.7
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.0e-104 383.6 225 80.0
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 1.0e-104 383.6 224 79.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 1.0e-104 383.6 225 79.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 1.3e-104 383.3 224 79.9
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.3e-104 383.3 216 82.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 2.3e-104 382.5 226 78.3
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-104 382.5 225 79.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 80.1
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.9e-104 381.7 212 83.5
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 5.1e-104 381.3 225 79.1
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.1e-104 381.3 224 79.9
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 8.6e-104 380.6 220 80.5
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 8.6e-104 380.6 225 78.7
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.9e-103 379.4 221 78.7
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.9e-103 379.4 226 77.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.5e-103 379.0 226 78.8
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 2.5e-103 379.0 224 79.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 7.3e-103 377.5 221 78.7
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 7.3e-103 377.5 217 80.2
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 7.3e-103 377.5 217 80.2
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 9.6e-103 377.1 215 80.9
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.6e-102 376.3 220 78.2
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.1e-102 375.9 226 78.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 2.1e-102 375.9 221 80.5
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 3.6e-102 375.2 221 78.7
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 6.2e-102 374.4 219 79.9
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 8.1e-102 374.0 224 77.2
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 1.1e-101 373.6 225 77.8
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.4e-101 373.2 218 79.4
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 5.2e-101 371.3 218 79.4
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.5e-100 369.8 251 70.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.6e-100 369.0 224 76.8
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 3.4e-100 368.6 239 73.6
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 5.8e-100 367.9 245 71.8
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 9.9e-100 367.1 224 78.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 1.7e-99 366.3 218 78.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.9e-98 362.8 215 78.1
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-97 359.8 218 78.9
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.7e-97 359.0 215 77.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.8e-97 357.5 217 71.9
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.3e-96 356.7 279 64.5
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.2e-92 343.6 228 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 2.2e-91 339.3 219 69.4
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 3.3e-87 325.5 221 66.5
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 5.6e-87 324.7 217 67.3
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 8.4e-83 310.8 222 64.4
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.0e-76 289.7 160 87.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 8.4e-75 284.3 161 86.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 2.7e-73 279.3 168 73.2
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 5.1e-72 275.0 161 77.0
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.5e-71 272.7 153 80.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 2.4e-69 266.2 215 57.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.5e-63 246.1 163 71.2
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 6.3e-62 241.5 131 82.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 8.2e-62 241.1 220 52.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 3.6e-57 225.7 218 52.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 4.3e-55 218.8 128 79.7
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 9.7e-55 217.6 213 47.9
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.2e-52 210.7 111 87.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.1e-49 198.4 148 70.9
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.0e-47 193.4 108 89.8
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 9.7e-47 191.0 112 74.1
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.3e-46 190.7 115 73.9
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.1e-42 177.6 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 7.0e-37 158.3 90 78.9
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.5e-34 150.6 134 58.2
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 2.3e-32 143.3 218 36.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 7.5e-31 138.3 98 73.5
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.0e-27 127.9 67 85.1
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.2e-26 122.5 74 81.1
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 5.5e-26 122.1 61 91.8
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 1.8e-24 117.1 83 63.9
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.4e-23 112.8 78 75.6
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 7.7e-20 101.7 54 81.5
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.6e-19 98.2 57 68.4
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.6e-17 92.8 64 68.8
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 1.8e-16 90.5 62 74.2
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.8e-16 90.5 61 77.0
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.5e-15 87.4 60 71.7
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 2.0e-15 87.0 59 74.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 1.4e-13 80.9 100 45.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 2.7e-12 76.6 54 72.2
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.6e-12 75.9 127 41.7
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.8e-12 75.1 50 72.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.3e-11 73.6 50 70.0
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 5.8e-07 58.9 35 80.0


User provided reference genes

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