Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 3.8e-199 698.0 357 100.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 6.8e-196 687.2 357 97.2
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.2e-195 686.4 357 97.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 8.6e-191 670.2 359 94.7
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 9.8e-187 656.8 359 92.8
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 8.3e-186 653.7 360 93.1
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 5.4e-185 651.0 359 91.9
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.4e-185 651.0 359 92.2
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.4e-185 651.0 359 92.2
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.4e-185 651.0 359 92.2
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 6.0e-184 647.5 355 92.7
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.3e-183 645.6 355 92.4
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 1.1e-177 626.7 360 89.2
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.4e-177 624.4 346 91.6
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.4e-177 624.4 346 91.6
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.4e-177 624.4 346 91.6
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.2e-165 586.6 345 84.6
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 2.5e-158 562.4 341 85.0
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 4.6e-152 541.6 348 79.3
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.1e-151 538.1 359 77.7
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.1e-151 538.1 359 77.7
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 5.1e-151 538.1 350 77.4
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 8.7e-151 537.3 361 75.6
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-150 534.3 353 77.3
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-150 534.3 364 75.5
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 1.6e-149 533.1 349 77.9
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-149 532.3 353 76.8
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 6.2e-149 531.2 353 76.5
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-148 530.4 353 76.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.1e-148 530.4 350 77.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 4.0e-148 528.5 348 78.2
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.0e-148 528.5 353 75.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 5.3e-148 528.1 359 74.4
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.9e-148 527.7 328 80.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.6e-147 525.8 357 74.8
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.4e-147 525.4 352 75.9
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 2.2e-146 522.7 351 76.1
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 3.8e-146 521.9 344 76.5
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.4e-146 521.2 340 77.9
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 6.4e-146 521.2 318 82.4
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 1.1e-145 520.4 342 76.9
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 2.4e-145 519.2 348 76.1
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.4e-145 519.2 360 73.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 2.4e-145 519.2 355 73.0
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 3.2e-145 518.8 321 80.7
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-145 518.1 361 71.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-145 518.1 361 71.5
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 7.1e-145 517.7 353 74.2
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.2e-144 516.9 367 73.0
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.6e-144 516.5 325 80.0
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-144 516.2 381 71.1
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 2.7e-144 515.8 330 78.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 2.7e-144 515.8 363 72.5
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 6.0e-144 514.6 348 75.3
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 7.9e-144 514.2 354 73.7
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.3e-143 512.7 320 80.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.0e-143 512.3 328 78.0
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 6.7e-143 511.1 336 76.5
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.9e-142 509.6 345 74.2
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.5e-142 509.2 323 78.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 2.5e-142 509.2 375 71.2
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 4.3e-142 508.4 313 79.2
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 5.6e-142 508.1 355 71.8
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 7.4e-142 507.7 355 72.4
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.6e-141 506.5 357 73.1
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.4e-140 503.4 295 82.0
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.4e-140 502.7 325 77.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-140 502.3 355 72.1
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 4.0e-140 501.9 347 73.2
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 5.3e-140 501.5 348 73.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 6.9e-140 501.1 351 74.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.5e-139 500.0 334 75.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.0e-139 499.6 326 77.0
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 2.2e-138 496.1 281 86.5
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 2.2e-138 496.1 334 74.3
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.4e-137 493.4 353 71.4
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.5e-137 492.7 297 81.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 4.2e-137 491.9 343 72.9
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 9.3e-137 490.7 341 72.4
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.7e-136 489.2 359 69.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 2.7e-136 489.2 321 77.3
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.0e-135 487.3 324 75.0
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.0e-135 487.3 324 75.0
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.3e-135 486.1 354 69.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.1e-135 485.0 302 75.5
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 5.1e-135 485.0 330 71.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.5e-134 483.4 352 70.2
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 1.5e-134 483.4 352 69.6
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 1.9e-134 483.0 300 77.3
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.3e-134 482.3 348 69.3
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.8e-133 479.2 354 68.6
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.1e-132 475.7 300 76.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 4.1e-132 475.3 295 77.3
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.0e-130 470.7 345 71.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.7e-130 469.9 339 71.4
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 2.2e-130 469.5 335 72.5
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.2e-130 469.5 327 71.3
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.9e-130 469.2 296 77.0
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 3.2e-129 465.7 338 72.2
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 4.2e-129 465.3 336 72.3
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 5.5e-129 464.9 330 70.0
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 8.7e-127 457.6 301 76.4
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 3.3e-126 455.7 338 71.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.7e-126 454.9 297 72.7
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.3e-125 453.8 295 76.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.3e-125 453.8 389 63.2
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.4e-124 449.5 324 70.7
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.5e-123 446.8 300 70.0
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-123 446.8 300 72.0
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 7.7e-123 444.5 343 65.3
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.0e-122 444.1 270 82.2
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.8e-122 442.2 364 66.5
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 9.4e-121 437.6 333 65.2
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.6e-120 435.6 314 67.8
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 3.6e-120 435.6 301 74.8
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 1.0e-119 434.1 392 60.2
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 4.4e-118 428.7 313 67.1
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.7e-117 426.8 344 67.7
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.7e-117 426.8 349 66.5
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 2.2e-117 426.4 365 63.3
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 5.3e-116 421.8 297 72.1
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 4.2e-113 412.1 312 68.6
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.6e-107 392.9 353 60.3
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.5e-105 387.1 233 83.3
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.6e-104 382.5 296 64.9
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.0e-103 379.0 229 80.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 8.8e-103 377.9 244 76.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 1.3e-101 374.0 306 63.7
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.4e-100 370.5 322 61.2
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 4.5e-99 365.5 300 61.7
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 1.8e-87 327.0 228 71.5
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.0e-86 323.6 217 71.9
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.1e-84 316.2 240 70.4
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 7.8e-83 311.6 354 51.7
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 9.5e-81 304.7 207 68.6
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 7.3e-73 278.5 197 71.6
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.3e-73 278.5 262 60.7
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 6.0e-67 258.8 178 74.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 4.1e-60 236.1 167 74.9
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.1e-58 229.2 147 71.4
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.8e-39 167.5 131 64.1
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.3e-39 166.0 131 61.1
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-38 164.5 122 65.6
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.9e-34 149.8 125 59.2
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.8e-32 143.7 117 69.2
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 5.8e-30 136.0 291 30.6
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 1.3e-29 134.8 119 63.0
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-29 134.0 79 96.2
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.9e-28 131.0 92 66.3
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 5.5e-28 129.4 124 60.5
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.1e-27 127.5 70 80.0
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 7.4e-25 119.0 142 49.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 4.0e-23 113.2 88 67.0
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 5.5e-20 102.8 87 55.2
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.5e-20 102.8 86 57.0
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.2e-16 90.9 78 50.0
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.7e-16 90.1 53 69.8
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-15 87.0 73 67.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 1.7e-13 81.3 52 67.3


User provided reference genes

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