Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.0e-151 537.0 284 100.0
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-82 310.5 300 66.3
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.3e-80 303.9 272 65.8
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.9e-31 140.6 324 38.0
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.6e-27 127.5 311 37.3
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 9.0e-26 121.7 288 37.2
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.5e-24 115.5 130 50.8
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 2.1e-22 110.5 303 36.0
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.7e-21 105.5 215 38.1
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.8e-19 100.1 235 35.3
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.8e-18 97.4 166 40.4
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 2.4e-18 97.1 198 34.3
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.7e-17 92.0 241 32.0
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 7.7e-17 92.0 288 31.2
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.3e-16 91.3 168 36.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.5e-16 89.0 294 30.6
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.5e-15 87.0 267 30.7
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 3.2e-15 86.7 162 36.4
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 9.4e-15 85.1 95 47.4
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.6e-14 84.3 289 31.1
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.6e-14 84.3 259 29.3
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.7e-14 82.8 94 45.7
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 2.3e-13 80.5 267 33.7
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 2.3e-13 80.5 267 33.7
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 2.3e-13 80.5 267 33.7
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 3.9e-13 79.7 220 34.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 5.2e-13 79.3 218 33.9
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 5.2e-13 79.3 283 29.0
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 6.7e-13 79.0 219 33.8
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 6.7e-13 79.0 102 45.1
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.1e-12 78.2 99 44.4
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.1e-12 78.2 91 46.2
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 1.1e-12 78.2 81 45.7
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.0e-12 77.4 114 38.6
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.6e-12 77.0 111 43.2
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.6e-12 77.0 93 41.9
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 3.3e-12 76.6 92 42.4
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.3e-12 76.6 81 48.1
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 5.7e-12 75.9 86 45.3
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 7.4e-12 75.5 81 48.1
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 7.4e-12 75.5 81 48.1
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 7.4e-12 75.5 94 43.6
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 7.4e-12 75.5 86 47.7
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 7.4e-12 75.5 86 41.9
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 9.7e-12 75.1 138 36.2
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 9.7e-12 75.1 88 44.3
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 1.3e-11 74.7 103 43.7
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.7e-11 74.3 74 50.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.7e-11 74.3 86 45.3
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.8e-11 73.6 99 40.4
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 3.7e-11 73.2 81 43.2
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 3.7e-11 73.2 86 46.5
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 4.8e-11 72.8 86 44.2
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.8e-11 72.8 86 44.2
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 8.2e-11 72.0 86 40.7
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.1e-10 71.6 301 28.6
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.1e-10 71.6 301 28.6
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.1e-10 71.6 172 35.5
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 1.8e-10 70.9 86 45.3
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.8e-10 70.9 155 33.5
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.4e-10 70.5 88 43.2
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.4e-10 70.5 152 34.9
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 3.1e-10 70.1 260 27.3
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 3.1e-10 70.1 79 45.6
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 4.1e-10 69.7 216 31.0
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 7.0e-10 68.9 83 39.8
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 9.1e-10 68.6 87 41.4
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.6e-09 67.8 224 28.1
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 2.6e-09 67.0 79 43.0
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.5e-09 66.2 103 38.8
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 5.9e-09 65.9 288 30.6
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.0e-08 65.1 110 39.1
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.0e-08 65.1 82 40.2
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.0e-08 65.1 288 27.4
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.3e-08 64.7 93 41.9
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.3e-08 64.7 91 39.6
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 1.3e-08 64.7 91 39.6
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 1.7e-08 64.3 60 51.7
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.7e-08 64.3 103 39.8
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 1.7e-08 64.3 195 30.3
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 1.7e-08 64.3 105 37.1
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.2e-08 63.9 79 40.5
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 2.9e-08 63.5 68 45.6
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 2.9e-08 63.5 83 39.8
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.9e-08 63.5 79 39.2
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 2.9e-08 63.5 136 31.6
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 2.9e-08 63.5 241 27.8
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 6.5e-08 62.4 86 34.9
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 8.5e-08 62.0 84 38.1
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 8.5e-08 62.0 214 30.4
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.5e-08 62.0 103 42.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 8.5e-08 62.0 99 34.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.1e-07 61.6 306 25.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 1.5e-07 61.2 88 35.2
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 1.5e-07 61.2 93 39.8
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.5e-07 61.2 93 40.9
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.5e-07 61.2 93 40.9
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.9e-07 60.8 91 36.3
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.9e-07 60.8 179 29.6
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.5e-07 60.5 75 41.3
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 2.5e-07 60.5 75 44.0
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 3.2e-07 60.1 83 38.6
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 3.2e-07 60.1 292 27.1
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 4.2e-07 59.7 219 26.0
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 5.5e-07 59.3 209 29.2
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 5.5e-07 59.3 89 40.4
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.2e-06 58.2 79 35.4
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.2e-06 58.2 166 30.7
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.2e-06 58.2 92 32.6
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 1.2e-06 58.2 188 29.8
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 2.1e-06 57.4 263 28.5
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 2.7e-06 57.0 265 26.4
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 3.6e-06 56.6 88 36.4
A05p17260 Brassica napus HOM05D012516 ORTHO05D003355 4.7e-06 56.2 73 35.6
BraA05t20625Z Brassica rapa HOM05D012516 ORTHO05D003355 4.7e-06 56.2 73 35.6
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 8.0e-06 55.5 178 27.5
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 8.0e-06 55.5 86 32.6


User provided reference genes

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