Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.1e-237 826.2 433 100.0
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 7.9e-215 750.4 450 90.4
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 4.4e-205 718.0 454 85.5
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 1.8e-203 712.6 450 84.7
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 1.6e-191 672.9 439 85.0
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.6e-189 665.6 455 81.8
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 2.6e-181 639.0 450 80.0
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.8e-179 632.9 455 77.1
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 3.1e-179 632.1 454 77.8
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 2.0e-178 629.4 454 77.1
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 3.5e-178 628.6 457 78.3
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 2.3e-177 625.9 458 76.4
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 3.8e-177 625.2 458 75.8
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 3.5e-162 575.5 462 71.0
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.2e-140 503.1 466 63.3
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 6.6e-137 491.5 472 61.0
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 1.1e-136 490.7 466 61.8
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 2.2e-132 476.5 420 65.2
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 6.6e-129 464.9 456 62.3
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 8.7e-129 464.5 456 62.1
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.9e-128 463.4 463 61.8
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 4.3e-128 462.2 476 58.2
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 1.3e-127 460.7 465 61.1
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 2.1e-127 459.9 458 60.7
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.1e-126 457.6 456 57.9
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 1.2e-125 454.1 464 59.9
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 3.4e-125 452.6 462 60.4
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 3.4e-125 452.6 466 59.7
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 1.7e-124 450.3 450 58.9
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 6.4e-124 448.4 464 60.3
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 6.4e-124 448.4 464 60.6
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.4e-123 447.2 464 60.1
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 6.0e-122 441.8 486 57.6
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 6.0e-122 441.8 463 60.7
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 6.7e-121 438.3 452 58.2
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 8.7e-121 438.0 447 60.0
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.5e-120 436.4 480 56.5
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 6.2e-119 431.8 470 57.4
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 8.1e-119 431.4 455 58.5
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 4.0e-118 429.1 461 59.2
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 1.5e-117 427.2 429 57.3
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 8.4e-116 421.4 457 56.0
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 1.1e-115 421.0 467 55.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 1.4e-115 420.6 458 54.8
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 2.5e-115 419.9 457 55.8
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 9.3e-115 417.9 442 55.9
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.6e-114 417.2 399 63.4
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 1.3e-113 414.1 467 55.7
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 3.0e-113 412.9 459 56.9
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 1.1e-112 411.0 460 55.0
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 2.5e-112 409.8 458 54.8
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 3.3e-112 409.5 461 54.7
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 3.3e-112 409.5 453 55.2
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 5.7e-112 408.7 418 58.4
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 2.8e-111 406.4 460 54.3
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 1.4e-110 404.1 531 51.0
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 3.1e-110 402.9 324 67.0
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 4.0e-110 402.5 467 55.0
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 5.3e-110 402.1 467 55.0
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 6.9e-110 401.7 466 56.2
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 1.2e-109 401.0 467 54.8
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 2.0e-109 400.2 466 53.2
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.5e-109 399.1 474 55.1
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.8e-108 396.0 473 55.0
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 6.5e-108 395.2 473 54.8
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.2e-107 392.9 461 54.0
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 9.3e-107 391.3 463 54.4
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 3.5e-106 389.4 464 52.2
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 4.6e-106 389.0 338 62.7
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 7.9e-106 388.3 449 52.1
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.1e-104 384.4 492 51.8
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 3.3e-104 382.9 315 64.4
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 9.7e-104 381.3 451 51.4
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.8e-102 377.1 406 57.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.4e-102 376.7 447 52.3
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.5e-101 374.0 437 51.9
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 6.5e-100 368.6 449 53.0
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.2e-98 364.4 392 54.6
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 2.1e-98 363.6 452 51.8
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 9.7e-96 354.8 442 49.8
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.1e-94 351.3 362 55.5
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.4e-94 350.9 445 50.3
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 2.2e-92 343.6 345 57.1
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 5.0e-92 342.4 395 53.2
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 7.9e-90 335.1 372 53.5
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.0e-89 333.2 255 68.6
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 8.8e-89 331.6 346 55.8
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.5e-88 330.9 416 49.3
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 7.7e-85 318.5 395 49.6
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.0e-84 318.2 532 41.9
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 2.5e-83 313.5 394 49.2
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 4.7e-82 309.3 388 49.2
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 7.4e-80 302.0 483 42.0
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 1.6e-77 294.3 317 51.1
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 7.2e-75 285.4 447 40.9
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.5e-72 277.7 472 42.8
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.5e-72 277.7 280 56.4
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.7e-71 273.1 470 42.6
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.4e-64 250.0 174 71.3
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 7.5e-64 248.8 423 46.1
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.1e-51 208.4 220 49.1
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 2.5e-51 207.2 352 38.9
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 2.3e-49 200.7 216 55.1
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 1.6e-45 188.0 175 60.6
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 6.6e-36 156.0 392 38.5
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.3e-31 141.7 175 48.0
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 5.6e-27 126.3 100 73.0
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 7.3e-19 99.4 183 42.6
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 3.8e-15 87.0 220 35.9
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 1.7e-12 78.2 58 69.0
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 2.9e-07 60.8 99 36.4
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.1e-06 58.9 66 57.6
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 7.1e-06 56.2 45 57.8


User provided reference genes

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