Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 5.7e-101 370.9 188 100.0
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 1.4e-88 329.7 191 89.5
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 6.1e-87 324.3 190 88.4
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 2.4e-75 285.8 193 80.3
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 1.0e-73 280.4 189 77.8
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 6.8e-70 267.7 189 72.0
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 2.8e-68 262.3 189 70.9
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 7.0e-67 257.7 181 75.7
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 7.2e-64 247.7 189 70.4
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 1.2e-63 246.9 181 70.7
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 1.2e-63 246.9 181 70.7
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 5.8e-45 184.9 180 55.6
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 4.4e-29 132.1 191 47.1
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 7.1e-27 124.8 181 40.9
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 3.6e-23 112.5 159 40.3
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 4.7e-23 112.1 158 43.7
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 1.1e-22 110.9 154 42.2
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 1.8e-22 110.2 153 40.5
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 2.4e-22 109.8 152 41.4
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 4.0e-22 109.0 110 48.2
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 5.2e-22 108.6 110 49.1
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 5.2e-22 108.6 110 49.1
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 6.9e-22 108.2 153 39.9
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 6.9e-22 108.2 110 49.1
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 6.9e-22 108.2 176 36.9
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 6.9e-22 108.2 126 46.0
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 6.9e-22 108.2 159 41.5
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 9.0e-22 107.8 127 44.9
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 1.2e-21 107.5 124 46.0
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.5e-21 107.1 110 49.1
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 1.5e-21 107.1 126 46.0
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.5e-21 107.1 156 41.7
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 3.4e-21 105.9 177 39.0
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 4.4e-21 105.5 107 49.5
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 5.8e-21 105.1 125 44.8
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 5.8e-21 105.1 177 39.0
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 7.6e-21 104.8 127 42.5
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 9.9e-21 104.4 110 48.2
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 9.9e-21 104.4 110 48.2
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 2.2e-20 103.2 146 41.8
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 2.2e-20 103.2 110 47.3
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 2.9e-20 102.8 110 46.4
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 2.9e-20 102.8 110 46.4
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 2.9e-20 102.8 190 34.2
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 2.9e-20 102.8 110 49.1
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 3.8e-20 102.4 181 38.1
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 4.9e-20 102.1 129 43.4
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 4.9e-20 102.1 129 43.4
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 4.9e-20 102.1 110 46.4
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 6.4e-20 101.7 95 52.6
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 6.4e-20 101.7 109 47.7
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 6.4e-20 101.7 151 40.4
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 8.4e-20 101.3 150 38.0
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 8.4e-20 101.3 117 44.4
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 1.1e-19 100.9 110 45.5
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 1.4e-19 100.5 110 43.6
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 1.4e-19 100.5 185 39.5
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 1.4e-19 100.5 159 39.0
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 2.4e-19 99.8 110 45.5
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 3.2e-19 99.4 110 46.4
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 4.2e-19 99.0 110 45.5
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 7.1e-19 98.2 112 46.4
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 7.1e-19 98.2 110 42.7
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 7.1e-19 98.2 110 48.2
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 7.1e-19 98.2 110 47.3
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 9.3e-19 97.8 109 48.6
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 1.2e-18 97.4 153 38.6
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 1.6e-18 97.1 119 43.7
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 2.1e-18 96.7 159 37.7
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 2.7e-18 96.3 162 39.5
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 2.7e-18 96.3 153 39.2
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 4.6e-18 95.5 110 43.6
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 4.6e-18 95.5 180 33.9
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 4.6e-18 95.5 144 37.5
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 1.0e-17 94.4 183 32.2
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 3.9e-17 92.4 109 45.0
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 8.7e-17 91.3 112 42.9
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 1.1e-16 90.9 110 40.9
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 3.3e-16 89.4 123 39.0
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 3.3e-16 89.4 74 59.5
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.3e-15 87.4 139 37.4
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 2.1e-15 86.7 139 37.4
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 6.2e-15 85.1 102 41.2
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.1e-11 74.3 88 43.2
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 1.2e-10 70.9 156 35.3
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 1.6e-10 70.5 80 43.8
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 3.0e-09 66.2 86 39.5
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 5.1e-09 65.5 104 33.7
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 3.3e-08 62.8 110 31.8
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 3.3e-08 62.8 110 31.8
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 7.4e-08 61.6 97 34.0
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 2.1e-07 60.1 77 40.3
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.7e-07 59.3 116 31.9
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 3.7e-07 59.3 110 30.0
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 6.2e-07 58.5 131 27.5
CDE11G0355 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 6.2e-07 58.5 106 29.2
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 6.2e-07 58.5 102 31.4
unitig_21.g20230 Utricularia gibba HOM05D004209 ORTHO05D004970 6.2e-07 58.5 95 32.6
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 8.1e-07 58.2 131 29.8
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 1.1e-06 57.8 97 32.0
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 1.1e-06 57.8 97 29.9
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 1.1e-06 57.8 102 31.4
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 1.4e-06 57.4 131 29.8
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 1.4e-06 57.4 97 29.9
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 1.4e-06 57.4 131 29.8
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 2.4e-06 56.6 102 31.4
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 28.9
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 3.1e-06 56.2 131 29.0
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 32.0
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 3.1e-06 56.2 98 32.7
Cpa.g.sc139.72 Carica papaya HOM05D004209 ORTHO05D004970 4.0e-06 55.8 97 29.9
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 4.0e-06 55.8 116 29.3
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 4.0e-06 55.8 110 28.2
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 4.0e-06 55.8 102 32.4
HPP92_000863 Vanilla planifolia HOM05D004209 ORTHO05D004970 4.0e-06 55.8 97 30.9
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 5.3e-06 55.5 97 27.8
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 6.9e-06 55.1 116 28.4
Actinidia11832 Actinidia chinensis HOM05D004209 ORTHO05D004970 9.0e-06 54.7 119 30.3
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 9.0e-06 54.7 97 29.9
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 9.0e-06 54.7 116 30.2
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 9.0e-06 54.7 116 30.2
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 9.0e-06 54.7 116 30.2
Sabra11G0024700 Salix brachista HOM05D004209 ORTHO05D004970 9.0e-06 54.7 110 28.2
Sp7g19360 Schrenkiella parvula HOM05D004209 ORTHO05D004970 9.0e-06 54.7 97 29.9
SGA_v2.0_scaffold7G03893 Striga asiatica HOM05D004209 ORTHO05D004970 9.0e-06 54.7 110 27.3


User provided reference genes

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