Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 3.7e-126 454.9 235 100.0
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 2.4e-117 425.6 235 93.2
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 4.0e-112 408.3 229 90.4
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.6e-108 396.4 233 85.8
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 2.1e-108 396.0 232 87.1
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.6e-105 386.3 234 86.8
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 8.9e-104 380.6 234 85.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 3.2e-101 372.1 236 83.5
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 4.2e-101 371.7 234 84.2
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 8.1e-89 330.9 208 83.2
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 1.5e-87 326.6 234 75.6
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 1.1e-82 310.5 222 72.5
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 5.5e-69 265.0 222 60.8
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 3.5e-68 262.3 233 59.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.0e-67 260.8 222 59.9
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 2.3e-67 259.6 222 59.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 2.3e-67 259.6 222 60.4
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 6.7e-67 258.1 221 60.2
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.1e-66 257.3 225 59.1
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.5e-66 256.9 198 66.2
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 1.9e-66 256.5 211 63.0
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.3e-66 255.8 229 59.8
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 2.2e-65 253.1 199 65.8
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 4.8e-65 251.9 198 65.2
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 6.3e-65 251.5 221 59.3
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 8.2e-65 251.1 221 58.4
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.1e-64 250.8 225 59.6
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.1e-64 250.8 224 57.6
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.4e-64 250.4 223 60.5
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.8e-64 250.0 223 59.2
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 2.4e-64 249.6 217 60.8
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 5.3e-64 248.4 212 61.8
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 3.4e-63 245.7 220 59.1
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 1.3e-62 243.8 221 57.5
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.3e-62 243.8 221 57.0
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 2.9e-62 242.7 221 61.1
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 1.1e-61 240.7 223 57.0
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.1e-61 240.7 224 56.7
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 2.5e-61 239.6 228 55.7
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 3.2e-61 239.2 199 63.8
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 2.7e-60 236.1 233 53.6
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 4.6e-60 235.3 223 55.6
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 2.3e-59 233.0 221 58.8
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 3.9e-59 232.3 221 59.3
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 8.8e-59 231.1 231 53.2
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.1e-58 230.7 221 58.8
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 3.7e-57 225.7 211 55.9
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.3e-57 224.9 225 57.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.1e-56 224.2 221 56.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.4e-56 223.8 224 58.0
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 2.0e-55 219.9 128 86.7
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 2.6e-55 219.5 167 65.3
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.0e-54 217.6 209 58.4
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.0e-54 217.6 222 51.8
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 5.5e-53 211.8 221 49.8
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.6e-52 210.3 220 55.0
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.6e-52 209.1 185 59.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 7.4e-50 201.4 203 49.8
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.1e-48 197.6 225 50.7
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.4e-48 197.2 174 58.0
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.4e-48 197.2 174 58.0
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 4.5e-47 192.2 113 89.4
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 4.5e-47 192.2 183 56.8
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 9.4e-45 184.5 200 51.0
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 2.1e-44 183.3 198 51.5
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 4.0e-43 179.1 224 46.4
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.0e-39 166.8 130 65.4
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 4.5e-39 165.6 152 55.9
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.4e-35 154.1 135 63.0
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.8e-35 153.7 233 40.8
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.6e-34 149.8 231 39.8
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 5.7e-34 148.7 134 56.7
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.1e-32 144.4 111 63.1
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.1e-32 142.9 163 47.9
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.1e-32 141.4 122 60.7
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.1e-32 141.4 122 60.7
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 2.7e-31 139.8 126 60.3
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.7e-31 139.8 157 49.7
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.5e-29 133.3 123 52.8
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 7.2e-29 131.7 115 54.8
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.4e-27 127.5 227 41.0
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 1.8e-27 127.1 125 54.4
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 3.0e-27 126.3 116 51.7
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 6.8e-27 125.2 108 60.2
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 8.8e-27 124.8 113 60.2
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.6e-26 123.2 136 50.7
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.4e-24 116.7 131 53.4
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 9.2e-24 114.8 136 48.5
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 5.9e-23 112.1 105 55.2
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 2.5e-21 106.7 111 54.1
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.3e-21 106.3 226 30.1
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.6e-21 105.5 101 50.5
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 3.4e-18 96.3 100 48.0
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 3.4e-18 96.3 73 63.0
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.4e-18 96.3 89 51.7
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.9e-17 93.2 180 32.2
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 8.3e-17 91.7 74 62.2
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.1e-16 91.3 124 46.0
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 2.0e-15 87.0 71 64.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.3e-14 83.6 65 61.5
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.0e-11 74.7 91 40.7
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.8e-10 68.9 100 34.0
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 1.3e-06 57.8 79 38.0


User provided reference genes

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