Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 1.3e-79 299.7 158 100.0
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 2.2e-69 265.8 165 89.1
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 6.5e-66 254.2 164 86.0
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.5e-62 243.0 162 83.3
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 5.5e-57 224.6 171 72.5
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 5.5e-57 224.6 171 72.5
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 7.2e-57 224.2 172 72.1
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 9.4e-57 223.8 168 74.4
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 2.6e-54 215.7 167 71.3
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 4.1e-52 208.4 170 67.6
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 4.1e-52 208.4 170 67.6
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 7.2e-49 197.6 173 67.1
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 7.7e-35 151.0 186 50.5
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 9.5e-25 117.5 150 48.0
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 4.6e-19 98.6 116 47.4
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 2.8e-16 89.4 142 42.3
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 3.6e-16 89.0 123 43.9
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 8.1e-16 87.8 112 43.8
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 1.4e-15 87.0 100 55.0
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 3.1e-15 85.9 124 40.3
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 3.1e-15 85.9 124 40.3
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 3.1e-15 85.9 102 49.0
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 4.0e-15 85.5 133 40.6
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 4.0e-15 85.5 124 40.3
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 6.8e-15 84.7 131 43.5
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 6.8e-15 84.7 101 47.5
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 6.8e-15 84.7 114 43.9
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.2e-14 84.0 116 48.3
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 1.5e-14 83.6 104 51.9
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 2.0e-14 83.2 119 42.9
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 2.0e-14 83.2 119 45.4
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 2.6e-14 82.8 107 45.8
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 2.6e-14 82.8 108 46.3
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 3.4e-14 82.4 128 41.4
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 5.8e-14 81.6 149 40.9
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 9.8e-14 80.9 102 49.0
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.7e-13 80.1 99 48.5
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 1.7e-13 80.1 137 37.2
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 1.7e-13 80.1 126 40.5
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 2.9e-13 79.3 121 40.5
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 4.9e-13 78.6 114 43.0
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 8.3e-13 77.8 116 41.4
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 1.1e-12 77.4 102 48.0
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 1.1e-12 77.4 96 46.9
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.4e-12 77.0 113 45.1
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 1.4e-12 77.0 109 45.0
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 2.4e-12 76.3 129 41.1
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.6e-11 73.6 118 43.2
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 2.7e-11 72.8 120 36.7
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 1.7e-10 70.1 111 39.6
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 1.7e-10 70.1 105 44.8
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.3e-10 69.7 107 43.0
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 3.0e-10 69.3 125 39.2
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 3.0e-10 69.3 107 43.0
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 3.9e-10 68.9 174 31.6
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 5.1e-10 68.6 116 40.5
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 8.6e-10 67.8 126 41.3
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 1.1e-09 67.4 116 39.7
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.1e-09 67.4 116 39.7
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 1.1e-09 67.4 103 44.7
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 1.5e-09 67.0 126 42.1
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.5e-09 67.0 101 44.6
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.5e-09 67.0 104 45.2
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 1.9e-09 66.6 106 39.6
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 1.9e-09 66.6 100 43.0
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 3.3e-09 65.9 47 66.0
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 5.6e-09 65.1 97 46.4
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 7.3e-09 64.7 116 39.7
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 9.5e-09 64.3 118 41.5
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.2e-08 63.9 117 44.4
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.2e-08 63.9 125 38.4
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 2.1e-08 63.2 100 43.0
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 2.8e-08 62.8 118 40.7
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 3.6e-08 62.4 101 42.6
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 4.7e-08 62.0 109 40.4
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 6.2e-08 61.6 93 44.1
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 8.1e-08 61.2 113 38.1
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 1.4e-07 60.5 101 41.6
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 5.2e-07 58.5 98 37.8
TAR633G1577 Trochodendron aralioides HOM05D007890 ORTHO05D009945 6.8e-07 58.2 43 62.8
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 1.2e-06 57.4 47 61.7
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 2.0e-06 56.6 101 35.6


User provided reference genes

Program Settings