Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 3.4e-117 425.2 250 100.0
AT4G00580 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.8e-77 291.6 278 60.4
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-61 240.7 171 76.6
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.5e-61 238.8 311 53.7
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-29 134.4 288 37.2
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.8e-25 120.6 167 47.3
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 8.2e-23 111.7 148 54.7
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 5.3e-22 109.0 175 37.7
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 4.7e-18 95.9 92 46.7
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-17 94.4 152 40.1
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.8e-17 94.0 143 37.1
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 4.0e-17 92.8 97 49.5
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 5.2e-17 92.4 92 47.8
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.8e-17 92.0 264 32.6
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 1.2e-16 91.3 208 34.1
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 1.5e-16 90.9 110 42.7
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 1.5e-16 90.9 90 48.9
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 3.4e-16 89.7 97 48.5
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 3.4e-16 89.7 99 45.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 4.4e-16 89.4 101 44.6
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 7.5e-16 88.6 162 36.4
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 7.5e-16 88.6 162 36.4
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 7.5e-16 88.6 162 36.4
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 7.5e-16 88.6 97 46.4
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 7.5e-16 88.6 87 47.1
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 9.8e-16 88.2 102 46.1
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 9.8e-16 88.2 102 46.1
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 9.8e-16 88.2 100 47.0
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 9.8e-16 88.2 90 48.9
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 2.2e-15 87.0 89 40.4
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 2.8e-15 86.7 158 34.8
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 2.8e-15 86.7 90 46.7
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 2.8e-15 86.7 177 36.2
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 3.7e-15 86.3 90 47.8
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 6.3e-15 85.5 105 44.8
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 6.3e-15 85.5 87 47.1
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 6.3e-15 85.5 162 34.0
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 6.3e-15 85.5 80 50.0
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 8.3e-15 85.1 90 48.9
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 8.3e-15 85.1 101 41.6
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 1.1e-14 84.7 118 41.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 1.1e-14 84.7 118 41.5
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-14 84.7 140 36.4
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-14 84.3 90 44.4
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 1.8e-14 84.0 87 44.8
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 1.8e-14 84.0 92 45.7
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.4e-14 83.6 86 47.7
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 2.4e-14 83.6 92 41.3
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.4e-14 83.6 157 37.6
THA.LOC104807749 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.4e-14 83.6 159 37.1
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.1e-14 83.2 150 38.0
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 3.1e-14 83.2 147 36.7
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 4.1e-14 82.8 91 45.1
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 5.4e-14 82.4 92 44.6
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 7.0e-14 82.0 157 33.8
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 9.1e-14 81.6 146 36.3
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 9.1e-14 81.6 88 40.9
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 9.1e-14 81.6 87 46.0
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 1.2e-13 81.3 92 42.4
AL6G21220 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 1.6e-13 80.9 113 45.1
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.6e-13 80.9 84 45.2
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 1.6e-13 80.9 88 46.6
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-13 80.9 100 44.0
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.0e-13 80.5 90 43.3
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 2.7e-13 80.1 84 45.2
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 2.7e-13 80.1 84 45.2
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 2.7e-13 80.1 87 43.7
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 3.5e-13 79.7 86 48.8
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 3.5e-13 79.7 83 45.8
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 3.5e-13 79.7 116 37.1
Lalb_Chr23g0277781 Lupinus albus HOM05D013281 ORTHO05D003355 3.5e-13 79.7 118 35.6
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 4.5e-13 79.3 137 38.7
MELO3C010709.2 Cucumis melo HOM05D005863 ORTHO05D003355 5.9e-13 79.0 87 48.3
Gohir.A03G131400 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.9e-13 79.0 90 42.2
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 5.9e-13 79.0 81 46.9
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 7.7e-13 78.6 93 43.0
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.0e-12 78.2 86 46.5
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.0e-12 78.2 131 37.4
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 1.7e-12 77.4 156 32.1
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 1.7e-12 77.4 82 42.7
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 1.7e-12 77.4 89 40.4
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 2.3e-12 77.0 85 43.5
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 2.3e-12 77.0 86 39.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 2.3e-12 77.0 86 39.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 3.8e-12 76.3 81 43.2
AT1G56100 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 3.8e-12 76.3 111 48.6
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 3.8e-12 76.3 81 45.7
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 3.8e-12 76.3 163 33.1
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 6.5e-12 75.5 87 41.4
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 6.5e-12 75.5 81 45.7
Phvul.001G257200 Phaseolus vulgaris HOM05D013281 ORTHO05D003355 6.5e-12 75.5 92 40.2
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.6e-12 75.1 93 43.0
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 8.6e-12 75.1 93 43.0
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 1.1e-11 74.7 81 46.9
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.9e-11 73.9 86 40.7
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 1.9e-11 73.9 91 38.5
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 5.5e-11 72.4 83 37.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 5.5e-11 72.4 86 37.2
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 7.2e-11 72.0 88 43.2
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 1.2e-10 71.2 81 44.4
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 1.6e-10 70.9 162 33.3
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 1.6e-10 70.9 92 37.0
FAN12G0897 Fragaria x ananassa HOM05D005863 ORTHO05D017031 4.7e-10 69.3 102 41.2
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 6.1e-10 68.9 88 44.3
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 8.0e-10 68.6 112 33.0
CANSAT01G3281 Cannabis sativa HOM05D005863 ORTHO05D003355 8.0e-10 68.6 101 36.6
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 1.0e-09 68.2 91 36.3
FAN07G0148 Fragaria x ananassa HOM05D005863 ORTHO05D017031 1.8e-09 67.4 94 43.6
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 2.3e-09 67.0 143 32.2
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 3.0e-09 66.6 90 42.2
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 3.0e-09 66.6 104 33.7
Thhalv10028182m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.0e-09 66.6 118 35.6
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.0e-09 66.6 102 40.2
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 3.0e-09 66.6 102 40.2
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 3.0e-09 66.6 102 38.2
FvH4_4g25060 Fragaria vesca HOM05D005863 ORTHO05D017031 4.0e-09 66.2 102 39.2
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 5.2e-09 65.9 102 36.3
EL10As2g23204 Beta vulgaris HOM05D025851 ORTHO05D003355 5.2e-09 65.9 135 31.1
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 8.8e-09 65.1 94 43.6
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.2e-08 64.7 86 38.4
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.2e-08 64.7 82 39.0
CARHR174360 Cardamine hirsuta HOM05D005863 ORTHO05D003355 1.5e-08 64.3 57 52.6
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 1.5e-08 64.3 86 36.0
arahy.Tifrunner.gnm1.ann1.VN6XRW Arachis hypogaea HOM05D015529 ORTHO05D015409 2.0e-08 63.9 65 47.7
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 2.0e-08 63.9 130 29.2
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.6e-08 63.5 74 40.5
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 4.4e-08 62.8 78 37.2
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 4.4e-08 62.8 86 37.2
arahy.Tifrunner.gnm1.ann1.1NC23U Arachis hypogaea HOM05D015529 ORTHO05D015409 7.5e-08 62.0 65 46.2
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 9.8e-08 61.6 65 46.2
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 1.3e-07 61.2 80 38.8
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 2.2e-07 60.5 65 44.6
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.8e-07 60.1 142 30.3
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 3.7e-07 59.7 121 27.3
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 4.9e-07 59.3 133 30.8
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 6.3e-07 58.9 117 32.5
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 8.3e-07 58.5 92 31.5
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 8.3e-07 58.5 81 37.0
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 8.3e-07 58.5 142 28.9
EL10Ac4g07554 Beta vulgaris HOM05D038882 ORTHO05D003355 1.4e-06 57.8 80 35.0
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 1.4e-06 57.8 84 36.9
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.4e-06 57.8 142 31.0
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 1.8e-06 57.4 115 34.8
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 2.4e-06 57.0 118 29.7
SGA_v2.0_scaffold171G38860 Striga asiatica HOM05D005863 ORTHO05D003355 3.1e-06 56.6 85 34.1
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 4.1e-06 56.2 83 39.8
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 5.4e-06 55.8 129 29.5


User provided reference genes

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