Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 1.2e-245 852.8 459 100.0
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.4e-230 802.0 464 94.0
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 9.3e-222 773.5 473 90.7
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 4.3e-203 711.4 476 83.2
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 4.8e-202 708.0 478 84.7
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 6.7e-196 687.6 478 82.2
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 8.7e-196 687.2 476 82.8
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.5e-195 686.4 478 82.0
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.8e-194 682.2 474 81.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 2.8e-194 682.2 474 81.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.2e-192 676.8 472 82.0
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 1.4e-190 669.8 469 81.4
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.0e-188 663.7 463 81.9
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.5e-166 590.1 484 68.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.5e-150 537.0 481 63.6
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 8.0e-149 531.2 469 62.0
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.4e-148 530.4 476 62.4
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 4.0e-148 528.9 474 61.2
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.5e-147 526.9 483 61.7
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.7e-146 523.5 474 61.2
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.4e-145 520.4 477 62.5
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.4e-145 519.6 478 61.9
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.5e-144 515.8 460 61.1
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 1.7e-143 513.5 487 58.1
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 3.8e-143 512.3 484 61.4
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 2.5e-142 509.6 460 61.1
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 3.3e-142 509.2 500 58.0
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 4.3e-142 508.8 489 58.5
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 7.3e-142 508.1 478 61.3
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.8e-140 503.4 481 61.3
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 5.2e-140 501.9 494 58.3
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 6.8e-140 501.5 484 58.3
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.9e-140 501.1 464 57.5
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.9e-140 501.1 466 59.9
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.2e-139 500.7 472 58.1
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.2e-139 500.7 492 58.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 2.6e-139 499.6 460 59.6
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 3.4e-139 499.2 476 58.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.4e-139 498.8 460 60.4
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.7e-139 498.4 460 60.0
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.3e-138 497.3 480 59.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.7e-138 496.9 476 59.5
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.2e-138 496.5 483 55.7
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.2e-138 496.5 483 55.7
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 5.4e-137 491.9 478 57.3
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 9.2e-137 491.1 463 56.6
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 1.6e-136 490.3 475 59.4
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.5e-136 489.2 468 57.1
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 4.6e-136 488.8 476 59.0
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.8e-136 488.0 466 60.3
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 7.8e-136 488.0 486 55.8
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.0e-135 487.6 485 56.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 2.3e-135 486.5 472 57.2
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 3.0e-135 486.1 476 59.5
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 6.6e-135 485.0 468 55.8
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 1.1e-134 484.2 512 54.9
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 1.1e-134 484.2 467 56.5
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.9e-134 483.4 466 59.7
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 2.5e-134 483.0 477 57.7
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 4.3e-134 482.3 476 55.7
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 3.6e-133 479.2 482 57.3
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 6.2e-133 478.4 480 57.9
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.8e-132 476.9 509 53.4
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 2.3e-132 476.5 502 58.0
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 4.0e-132 475.7 472 55.7
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 5.8e-131 471.9 465 55.1
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 7.5e-131 471.5 482 56.4
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 9.8e-131 471.1 467 56.7
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.3e-130 470.7 476 55.3
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.2e-130 469.9 467 57.6
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 2.9e-130 469.5 454 58.1
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.1e-129 465.7 463 55.5
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 4.1e-129 465.7 465 57.0
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.6e-128 463.8 476 54.6
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 1.6e-128 463.8 466 58.4
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.0e-128 463.4 480 57.7
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 2.7e-128 463.0 464 54.5
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 7.8e-128 461.5 471 56.5
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 7.8e-128 461.5 471 57.3
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 3.9e-127 459.1 470 56.6
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.0e-127 458.8 475 54.9
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.5e-126 457.2 475 53.9
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-126 456.8 473 54.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.5e-126 456.4 481 54.9
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.8e-124 450.3 488 53.5
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 5.2e-124 448.7 493 55.6
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 9.9e-123 444.5 474 55.3
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.1e-121 441.0 474 53.6
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.0e-119 434.5 471 53.1
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.9e-119 432.6 473 55.8
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 2.6e-115 419.9 487 50.3
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 9.9e-115 417.9 471 49.9
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 4.9e-114 415.6 471 49.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 6.4e-114 415.2 399 60.4
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 3.2e-113 412.9 494 50.2
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.1e-113 412.5 474 51.9
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.3e-111 407.5 467 50.7
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 2.3e-111 406.8 416 57.2
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.2e-109 401.0 425 54.1
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.1e-108 396.4 403 58.3
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 5.8e-107 392.1 428 53.7
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.3e-106 391.0 403 57.8
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.3e-95 354.4 495 46.3
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.6e-93 347.4 319 56.1
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 9.0e-84 315.1 454 43.2
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 1.2e-80 304.7 473 43.1
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.8e-79 300.8 228 75.4
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 4.5e-75 286.2 396 43.9
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 1.3e-74 284.6 470 39.4
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 3.8e-74 283.1 191 74.3
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 2.2e-69 267.3 308 51.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 6.9e-68 262.3 465 40.2
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 2.7e-64 250.4 303 49.2
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.5e-57 226.1 347 40.1
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 9.4e-57 225.3 221 56.6
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 9.4e-57 225.3 238 51.7
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 8.0e-56 222.2 308 44.5
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.2e-53 214.2 176 59.7
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 2.4e-52 210.7 308 38.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.0e-51 207.6 151 77.5
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 4.4e-38 163.3 318 37.7
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.3e-37 161.8 229 41.5
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.2e-32 145.2 294 34.4
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 2.0e-27 127.9 142 50.7
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 7.8e-27 125.9 185 44.3
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 1.8e-23 114.8 181 47.5
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 3.7e-21 107.1 94 55.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.0e-18 99.0 109 49.5
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.2e-16 92.0 74 62.2
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.2e-16 92.0 240 29.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.6e-08 63.9 120 33.3
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.7e-08 63.5 126 34.1
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 8.1e-08 62.8 129 31.8
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 2.3e-07 61.2 143 31.5
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.1e-07 60.8 126 31.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.1e-07 60.8 128 34.4
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.0e-07 60.5 118 33.9
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.0e-07 60.5 118 33.9
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 5.2e-07 60.1 139 32.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 5.2e-07 60.1 120 32.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 5.2e-07 60.1 124 33.1
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 6.8e-07 59.7 119 32.8
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 8.9e-07 59.3 129 33.3
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.9e-07 59.3 120 31.7
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 8.9e-07 59.3 179 29.6
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.5e-06 58.5 104 46.2
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.6e-06 57.8 144 31.9
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.6e-06 57.8 186 27.4
MSTRG.21971 Avicennia marina HOM05D002747 ORTHO05D003069 3.4e-06 57.4 96 33.3
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.4e-06 57.4 128 29.7
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 3.4e-06 57.4 57 43.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.4e-06 57.0 128 32.0
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 4.4e-06 57.0 81 35.8
Gohir.D07G206600 Gossypium hirsutum HOM05D002747 ORTHO05D003069 4.4e-06 57.0 98 32.7
Gorai.001G232900 Gossypium raimondii HOM05D002747 ORTHO05D003069 4.4e-06 57.0 98 32.7
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 4.4e-06 57.0 118 30.5
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 4.4e-06 57.0 71 38.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 5.8e-06 56.6 128 32.8
DCAR_024465 Daucus carota HOM05D002747 ORTHO05D003069 5.8e-06 56.6 93 35.5
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 5.8e-06 56.6 126 31.7
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 5.8e-06 56.6 53 47.2
Gohir.A07G200300 Gossypium hirsutum HOM05D002747 ORTHO05D003069 5.8e-06 56.6 98 32.7
Os02g0504500 Oryza sativa ssp. japonica HOM05D002747 ORTHO05D003069 5.8e-06 56.6 64 39.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.5e-06 56.2 127 29.1
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 7.5e-06 56.2 125 31.2
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 9.9e-06 55.8 55 49.1
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 9.9e-06 55.8 55 49.1
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 9.9e-06 55.8 64 42.2
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 9.9e-06 55.8 59 42.4
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 9.9e-06 55.8 143 31.5
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 9.9e-06 55.8 82 34.1
Psat4g200400 Pisum sativum HOM05D002747 ORTHO05D003069 9.9e-06 55.8 81 35.8


User provided reference genes

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